KEGG   Colwellia sp. Arc7-635: EKO29_12055
Entry
EKO29_12055       CDS       T06022                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cov  Colwellia sp. Arc7-635
Pathway
cov03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cov00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EKO29_12055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cov03019]
    EKO29_12055
   03009 Ribosome biogenesis [BR:cov03009]
    EKO29_12055
Enzymes [BR:cov01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     EKO29_12055
Messenger RNA biogenesis [BR:cov03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EKO29_12055
Ribosome biogenesis [BR:cov03009]
 Prokaryotic type
  rRNA processing factors
   EKO29_12055
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AZQ86316
UniProt: A0A3Q9GC16
Position
2780813..2783929
AA seq 1038 aa
MLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKAKITRIEPSLEAAFVDYGAD
RHGFLPMKEIAREYFPKGYSFQGRPNIKEVLREGQEVIVQIDKEERGQKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTDLKASLSKLTLPKGMGLIVRTAGVGKEYEELEWD
LNVLLHHWNAISEAGASRPAPFLIHQETNVILRAIRDYLRRDIGEVLIDRPKIFESVKKH
IEIVRPDFLSKVKLYNNDVPLFTHYQIETQIETAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMR
DAVKQDRARIQLGRISRFGLLEMSRQRLRPSIGETSQGVCPRCSGTGHVRGVESLALSVL
RLMEEEAIKDNTQQVQAQVPVPVATYLLNEKRRSVFHIEKHHSVNILIIPNPNMVTPQYE
VIRVRKDEGIEEASYDMATKQAVTEEAVMPKFDKEVSKRDEPLLQGMSSPKQAPKKQEPV
PVVEVKAETESLLTSAISWVKSLFATEAKEEVKPAPKKAPETTARNSERRPQRGRQGQRR
NNRNDSRNDSRNENRAEGVNDTRNTNRNDKRKPQSSNDNTATKQNVEAVVTTPKPQKERV
QKPKEEKVAERRQRRNNRKKVRVNSDVKNNTHVENKNVDGTEVKAQAPENKAIETTHIVD
TPVVEVPKVEAAKVEQTSAVETVDTVNTDTSANKAKEEQRPRSRRSPRHMRAHGQRRRQN
ADAEASTEITEDPVTARYPEQSSTPADSTSNEVTESKPTVEQVQQVQADALAEVINDSKN
EVQQNLPFDEPEAAVIATDAKATEQTTEDVKPEAVSAPVVDTPAPVVEAPVKVSSEKAEI
AETPVIEEKVADVKVEETVSIEQPAPETSEVETDVSTPAIEAVTTTTEDKPVTAEEKPKK
VRAKVKNIKRTVKAAARKSSGKASAPMAKPETIVSSGVIPRDFVANEQRTSHSTSGKTAL
VSNATSRHSAGATKPTLD
NT seq 3117 nt   +upstreamnt  +downstreamnt
atgttaattaatgctacacaatcagaagaattgcgtgtagcacttgtagatggtcaacaa
ctttacgatttagatatcgaaagccctggtcacgaacaaaaaaaatcaaatatctataaa
gctaaaatcacccgtattgaaccgtcgttagaagcggcgtttgttgattatggtgctgat
cgccacggttttttaccaatgaaagaaatcgcccgtgaatacttccctaagggctacagc
ttccaaggccgtcctaatatcaaagaagtgcttcgtgaagggcaagaagttatcgttcaa
attgataaagaagagcgtggccaaaaaggtgcagcgttaacgacttttatcagtcttgca
ggtagctacctagtacttatgccaaataaccctcgtgctggtggtatttctcgccgtatc
gaaggtgatgagcgtacagatttaaaagcgtcattaagtaaacttactcttcctaaaggc
atgggcttaattgttcgtacagctggtgtaggcaaagaatatgaagaacttgaatgggat
ttaaacgttctattacatcattggaacgccatatcagaagccggtgcgagccgccctgct
ccgttcttaattcatcaagaaacaaacgttattttacgtgctattcgtgattacttacgt
cgtgatattggtgaagtattaattgatcgtcctaaaattttcgaaagtgtgaaaaagcac
atcgaaattgttcgacctgactttttaagtaaagttaaactttacaataatgacgtacct
ttatttacgcattatcaaattgaaacgcaaattgaaacagcctttcaacgtgaagtacgc
ttaccatctggtggttcaatagttattgatccaacagaagctttaacctctatcgatatt
aactctgcccgcgccacaaaaggtagtgatatagaagagactgcattcaacacaaactta
gaagccgctgaagaaattgctcgccaattacgtttacgtgatttgggtggcctagtggtt
atcgattttatcgatatgactcctgttcgccatcaacgtgaagttgaaaatagaatgcgc
gatgccgtgaaacaagacagagcacgcattcaattaggtcgtatttcacgttttggatta
cttgaaatgtcacgccaacgtttgcgcccttctattggcgaaacaagccaaggtgtttgt
cctcgttgtagtggtaccggccatgttcgtggtgttgaatctttagcattgtcagtattg
cgtttgatggaagaagaagccattaaagacaatactcaacaagtacaagcacaagtgcct
gttcctgttgcaacgtatttattaaacgaaaaacgtcgctctgtatttcatatcgaaaaa
catcacagtgtcaatattctgattattcctaatcctaatatggttacaccgcaatatgaa
gttatccgcgtaagaaaagacgaaggtatcgaagaagccagctatgatatggcaactaag
caagcagtaactgaagaagctgtaatgcctaagttcgataaagaagtcagtaaacgcgat
gaacctttattacaaggtatgtcttcacctaagcaagcacctaaaaaacaagagcctgtg
cctgttgtagaagttaaagctgaaacagaaagcttactaacaagtgctatatcttgggtt
aaatctctttttgctactgaagcaaaagaagaagttaaaccagcaccgaaaaaagcgcca
gagactacggctcgcaatagcgaacgtcgtccacaacgtggtcgtcaaggtcaacgtcgt
aataatcgtaatgattcacgcaatgactcgcgtaacgaaaaccgtgctgaaggtgttaat
gatacccgcaacacaaaccgtaacgacaaacgtaagccgcaaagtagcaatgacaacacg
gcgactaagcaaaatgtagaagcagtagtaacaacgcctaagccgcaaaaagaacgtgtt
caaaagcctaaggaagaaaaagtagctgaacgtcgtcaacgtcgtaacaatcgtaagaaa
gtgcgtgttaatagcgatgttaaaaacaatacccatgttgaaaataaaaatgttgatggt
actgaagttaaagctcaagcacctgaaaacaaagctattgaaacaactcatattgttgat
acacctgtagttgaagtgccaaaggttgaagcagctaaagttgaacaaacatcggcagta
gaaactgttgatactgtaaatactgatacttcagctaacaaggcaaaagaagagcaacgt
ccaagaagtcgtcgttctcctcgtcatatgcgagcacacggtcagcgtcgtagacaaaat
gcagatgcagaagcctctactgaaataactgaagatccagtaacagctcgttacccggag
cagagttcaactccagcagatagcacttcaaatgaagtaactgaatcaaagcctactgtt
gagcaagttcaacaagtgcaagctgacgcattagctgaagtaattaatgactcaaaaaat
gaagttcaacagaacttaccatttgatgagccagaagcagcagttattgctaccgatgct
aaagctacagagcaaacaactgaagatgttaagcctgaagctgtatcagcaccggttgtt
gatactccagctccagttgtcgaagcaccagtgaaagttagcagtgagaaagctgaaata
gctgaaacaccggttatagaagaaaaagttgcagatgttaaggtagaagaaacagtttct
atcgagcagccagcaccagaaacttctgaagtagaaacggatgtttcaacaccagcgata
gaagctgtaacaacgacaactgaagataagcctgttaccgctgaagaaaaacctaaaaaa
gtacgtgctaaagttaaaaatattaaacgtacagtgaaggcagcagcacgtaaatcatca
ggaaaagcatcagctcctatggctaagccagaaactattgttagcagcggtgttatccca
cgtgatttcgtcgcaaacgagcaaagaacttcgcatagcacatcaggtaagacagcactt
gttagcaatgcaactagtcgacattcggcaggtgcaactaagccaacacttgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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