KEGG   Cupriavidus oxalaticus: E0W60_23440
Entry
E0W60_23440       CDS       T06004                                 
Symbol
ribD
Name
(GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
cox  Cupriavidus oxalaticus
Pathway
cox00740  Riboflavin metabolism
cox01100  Metabolic pathways
cox01110  Biosynthesis of secondary metabolites
cox01240  Biosynthesis of cofactors
cox02024  Quorum sensing
Module
cox_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:cox00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    E0W60_23440 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    E0W60_23440 (ribD)
Enzymes [BR:cox01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     E0W60_23440 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     E0W60_23440 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD APOBEC3
Other DBs
NCBI-ProteinID: QBY53991
UniProt: A0A4P7LNT3
Position
2:2718926..2720041
AA seq 371 aa
MFSDTDHAAMQQALALAARGMFTTTPNPRVGCVLVKDGQVIGQGYTQPAGQDHAEIQAIK
DALSRGLDPDGATAYVTLEPCSHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQR
LRDAGIDVRCGLLEKEARDLNIGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQ
AARDDGHAWRARACAILTGIGTVRDDDPALTVRALATPRQPQRVLVDSRLEVPLDAKILA
PDAGEFAKPVLVFCAVEDRERQRALEARGAEVVVLPNPHGKVELPRMLQELGRRGINELH
VEAGFKLNGSLVREHCADELLIYLAPKLLGDAQGMFNLPPLARLQDAAQFRWHEIRQIGD
DLRLIARRNDA
NT seq 1116 nt   +upstreamnt  +downstreamnt
atgttttccgataccgaccacgccgccatgcaacaggccctcgcgctcgccgcgcggggc
atgttcaccaccacgcccaatccgcgcgtcggctgcgtgctggtcaaggacggccaggtc
atcggccagggttacacccagccggccggacaggaccatgccgaaatccaggcgataaaa
gacgcgctgtcgcgcgggctggatccggacggcgccaccgcctacgtcacgctcgagccg
tgcagccacttcggccgcacgccgccatgcgccgatgcgctggtgcgcgccggcgtggcg
cgggtggtagcggcaatggaagaccccaacccctcggtctccggacgcggcctgcagcgc
ctgcgcgatgccggcatcgacgtccgctgcggcctgctggaaaaggaagcgcgcgatctc
aacatcggtttcgtgtcgcgcatgacgcgcgggctgccgtgggtgcgggtcaaggtggcg
gcgtcgatggacggcggcaccgcgctgcatgacggcaccagccagtggatcaccggccag
gcggcgcgcgacgacggccatgcctggcgcgcgcgcgcctgcgcgatcctgaccggcatc
ggcacggtccgcgacgacgacccggcgctgaccgtgcgcgcgctcgccaccccacgccag
ccgcagcgggttttggtcgactcgcggctggaagtgccgctcgacgcaaagatcctggcg
ccggacgccggcgagttcgccaagccggtgctggtgttctgcgcggtggaagaccgcgaa
cgccagcgggcgctggaagcgcgcggcgccgaagtggtggtcctgcccaacccgcacgga
aaggtcgagctgccccggatgctgcaggagctgggccggcgcggcatcaacgaattgcac
gtcgaagcgggcttcaagctcaatggctcgctggtgcgcgaacactgcgccgacgagctg
ctgatctacctggcgcccaagctgcttggcgacgcgcagggcatgttcaacctgccgccg
ctggcgcggctgcaggatgccgcgcagttccgctggcatgaaatccggcagatcggcgac
gacctgcggctgatcgcgcgccgcaacgacgcctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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