KEGG   Clostridium pasteurianum DSM 525 = ATCC 6013: CPAST_c08720
Entry
CPAST_c08720      CDS       T03811                                 
Symbol
helD1
Name
(GenBank) helicase IV
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
cpae  Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpae03420  Nucleotide excision repair
cpae03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CPAST_c08720 (helD1)
   03430 Mismatch repair
    CPAST_c08720 (helD1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpae03400]
    CPAST_c08720 (helD1)
Enzymes [BR:cpae01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CPAST_c08720 (helD1)
DNA repair and recombination proteins [BR:cpae03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CPAST_c08720 (helD1)
   MMR (mismatch excision repair)
    Other MMR factors
     CPAST_c08720 (helD1)
SSDB
Motif
Pfam: UvrD-helicase AAA_19 UvrD_C PhoH DEAD Viral_helicase1 UvrD_C_2 SLFN-g3_helicase AAA_11 ResIII AAA_30 T2SSE AAA_16 NACHT GapR_DNA-bd
Other DBs
NCBI-ProteinID: AJA46972
UniProt: A0A0H3J2F7
Position
complement(955181..957418)
AA seq 745 aa
MNNIELKLENEWLQQVLKEIEKQLNEKSNFKKKFRDDAIETQRQLWNDIGSVSITNGLDQ
IVDFIQFINTMKTQKRTHEFTRKLEEKYKKMLLSPYFGRIDFLESGDEKSEKYYIGISNL
INDNYDFMVYDWRSPVSSMFYDYEIGDAGYECPEGIINGKVTLKRQYKIYKDKIEYMFDS
NLKIDDEILQNILSKNTDSKMKAIATTIQREQNKVIRNEEYKNLIVQGPAGSGKTSVALH
RIAYLLYKHRDKITPENIIIFSPNEIFNDYISNVLPELGEDTMYQTTFNEYMNNSLCNNL
IKETYCQMMEYILASKKHDYYETRINSIKFKSSLEFINILKQYVVYLEKKNRNFTDIILR
DHLIISSNDIQELFFKDYSQLPLKRRLHKIKERILFLLEPYKKRMIAEVANELRNSGDYV
DKIEIMELSKTSIDNEMKSVYHEIDKITAFDLLSAYKKLFENLEFFLRKSNTDYDEKIID
DIKIYTLQNIKAEKLNYEDQPPLLYLKGVLEGLPKTLEIKYVIIDEAQDYTPLQYEIFHQ
LFNSANITMLGDLNQSINPFMNVGNYNNISNIFPKDNTCIINLTKSYRSTMEITKFSRKL
LNKNITDEYIERSGNKPSVLGFSNEEAIKERLIDDVKIYKEKGYKSIGIITRTVKEAQEV
YRFLKDKIEIKIITKDDDAYVSDSLIIPAYLAKGLEFDVALIYNAGNENYNCEEERLLLY
TACTRALHVLCIYYSGQITPLLAEK
NT seq 2238 nt   +upstreamnt  +downstreamnt
atgaataacattgaattgaaattggaaaatgaatggttacaacaggttctcaaagaaatt
gaaaaacagcttaatgaaaaaagtaattttaagaaaaagtttagagatgatgccattgaa
acccaaagacaattatggaatgatataggttctgtttctataacaaatggactggatcaa
attgtagattttatacaattcattaatactatgaaaacacaaaaaagaacccatgaattt
accagaaaacttgaagaaaaatataagaaaatgcttttatcaccctattttggcagaatt
gattttcttgaaagtggtgatgaaaaatcagaaaaatattatattggcatttccaatctc
attaatgataactacgatttcatggtatatgactggagatcacctgtctccagcatgttt
tatgactatgaaattggagacgctggctatgaatgtcccgaaggaatcattaacggaaaa
gttacactaaaaagacaatacaaaatttataaagataaaattgaatatatgtttgatagt
aatcttaaaatagatgatgaaatacttcaaaatatactgagtaaaaatactgatagtaag
atgaaagctatagcaaccaccattcaaagagaacaaaataaagtaattcgtaatgaagag
tacaaaaatttaattgttcagggtcctgctggaagcggaaaaacttctgtggctcttcat
agaattgcctatttattatataagcatcgtgataagataacacctgaaaacataataata
ttctctccaaatgaaatttttaacgattatatctctaatgtattacctgaactaggagaa
gatactatgtaccagacaacctttaatgaatatatgaataacagcttatgcaataacctt
ataaaagaaacttattgccagatgatggagtatattcttgcatctaaaaagcatgattat
tatgaaaccaggataaacagtataaagtttaaatcttccttagaatttataaacatatta
aagcaatatgtagtttatcttgaaaaaaagaacaggaactttacagatataattctaaga
gatcatttaataatctcttctaatgatatacaggagttattttttaaagattattcccaa
cttccactaaaaaggaggctgcataagataaaagaaagaattttattcctcttagagcct
tacaaaaaacgtatgatagcggaagtggctaatgaactcagaaattcaggtgactatgta
gataaaattgaaattatggaattaagcaagacctctatagacaatgaaatgaaaagtgta
taccatgaaattgataaaatcacagcgtttgatttgctaagtgcttataaaaagcttttt
gagaaccttgagtttttcctaaggaaatcaaatactgactatgatgaaaagatcattgat
gatataaaaatctatactttacaaaatatcaaagcagaaaaacttaactacgaagaccag
cccccgcttttatatctaaaaggtgtacttgagggacttccaaaaactttagaaataaaa
tatgttattattgatgaggcacaagattatacaccgcttcagtatgaaatctttcatcag
ctttttaattctgccaatataaccatgctcggtgatttgaatcaatctattaacccattt
atgaatgtaggaaattacaacaatatatctaatatattccctaaggataatacctgtata
ataaatttaactaaaagctatagatccactatggaaatcaccaagttttcaagaaaactt
ctcaataaaaacattactgatgaatatatagaaagaagtggaaataaaccttcagtactt
ggcttttcaaatgaagaagctataaaagaaagacttattgatgatgtaaaaatatataag
gaaaaaggctataaatctataggcattataacaagaactgtaaaggaagcgcaggaagta
tacagattcttaaaagataaaattgaaattaaaataataaccaaagatgatgatgcatac
gtaagtgatagtttgataataccagcttatcttgctaaaggattagaatttgatgtagca
cttatatataatgcaggaaatgaaaattataattgtgaagaagaacgtcttctgctttac
actgcttgcaccagagcacttcatgttctatgcatatactactcaggccaaattacaccc
ttattagcagaaaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (26)   

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