KEGG   Carica papaya (papaya): 110809215
Entry
110809215         CDS       T05151                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE-like
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110809215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cpap03036]
    110809215
Chromosome and associated proteins [BR:cpap03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110809215
  Chromatin remodeling factors
   NuRD complex
    110809215
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like DUF1087 Helicase_C Chromo ResIII HDA2-3 PHD CHDCT2 PHD_4 Myb_DNA-binding DEAD C1_2 C1_1
Other DBs
NCBI-GeneID: 110809215
NCBI-ProteinID: XP_021890664
Position
Unknown
AA seq 1370 aa
MSSLVERLRIRSDRRPIYNLDESDDDADLVPKKPGAQEKFEPIVRIDAKDNACQACGEGE
NLLSCETCTYAYHPKCLVPPIKAPLPENWRCPECVSPLNDIDKILDCEMRPTVAGGNDAS
KLGAKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLKTKVNNFNRQMSSINNSE
EDFVAIRPEWTTVDRILACRGDEEKEYLVKYKELSYDECYWESESDISAFQPEIERFNKI
QSRSQNLSASKQVELKKKAREFQQYEHSPNFLSGGSLHPYQLEGLNFLRFSWSKQTHVIL
ADEMGLGKTIQSIAFLASLFEESITPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQ
ARTVIREHEFYFPKRHKKIKKKKYGQIVSESKQERIKFDVLLTSYEMINLDTASLKPIKW
ECMIVDEGHRLKNKDSKLFSSLKQYTSNHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL
EEFQEEFKDINQEEQIMRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYK
AILTRNYQILTRRGGAQISLINVVMELRKLCCHPYLLEGVEPDIEDSNEAYRQLLESAGK
LQLLDKMMMKLKEQGHRVLIYSQFQRMLDVLEDYCTYKKWQYERIDGKVGGAERQIRIDR
FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI
YRLITRGTIEERMMQMTKKKMILEHLVVGKLKTQNINQEELDDIIRYGSKELFADENDEA
GKSRQIHYDDAAIDRLLDRDHVDAEEASLDDEEEDGFLKAFKVANFEYIDEADAIAEEKA
QKAAMENKSSMSNSERSNFWEELLKDSYEVHKVEEFSALGKGKRSRKQMVSVEEDDLAGL
EGVSSEGEDDNYEADLTDGDTTSSGTQRRPYRKRARGSSEPAPLMEGEGRSFRVLGFNQN
QRATFVQILMRFGLGDFDWKEFVPRLKQKTFEEIRDYGTLFLRHVVEDLNDSPTFSDGVP
KEGLRIPDVLVRIAILTLIQERIQYAEENPGSPLYGDDIVARYPALKGGKFWKEEHDLIL
LRAVLKHGYGRWQAIVDDKDLRIQEVICKELNLPFINLPAPGQSSSQTQNGATTSNVEGP
GNNSLGAGDDRTTDMAQGPVDPASHSQLYQDPSILYHFRDMQRRQVEFVKKRVLLLEKGH
NAEYQKIYDAETGNSPTEVAENVPGGSGVEVPSTMDIDDDSIDQLPALEVIAPEDFSLPG
DSERTELAVRYNEMCKILDQNVPESAQAYLNNPVNPSLRKSLQPLETLFENISVALSPNL
KQSTTQQIDLEQATGAGIMIRESMEQKRPGDSNDEVEPDTSLAATAPAQK
NT seq 4113 nt   +upstreamnt  +downstreamnt
atgagtagcttggttgaaaggttgaggattaggtcggatcggaggccgatatataactta
gatgaatcagatgatgatgcggatcttgttccaaaaaagcctggtgctcaagaaaagttt
gagccgatagtcaggattgatgcgaaagacaatgcatgtcaagcttgtggcgaaggtgaa
aatcttttgagctgtgaaacatgtacttatgcttaccatcctaaatgtttagttccacct
ataaaagctccccttcctgaaaactggaggtgtcctgaatgcgttagccctttgaatgat
attgacaagatattggactgtgaaatgcgcccaacagtagctggtggtaatgatgcctct
aagctgggtgcaaagcaaatttttgtaaaacaataccttgtgaagtggaagggattatct
tacctgcattgtacttgggtaccggagaaagagttcctgaaagctttcaagtcaaatcct
cgtttgaagactaaagtgaacaactttaatcgtcaaatgtcatcaatcaataactctgag
gaagattttgttgccattcggccagagtggactactgttgatagaattcttgcctgcaga
ggagacgaggaaaaagaatatcttgtgaagtataaagagctttcttatgatgaatgttat
tgggagtctgaatcagatatctctgcatttcaacctgaaattgaaaggtttaataaaatt
cagtctaggtctcaaaacttgtctgctagtaaacaggttgagttgaaaaagaaagcacga
gaattccaacagtatgagcatagtcccaattttctctctggaggctcactgcatccatat
cagcttgaggggctgaacttcttacgcttttcatggtccaaacaaacacatgtgatactt
gctgatgagatgggccttggaaaaaccatacagagtattgcttttttggcgtctcttttt
gaagaaagcatcactccacatttggtggttgccccactgtcaactctgcgaaactgggaa
cgggaatttgcaacatgggctccccaaatgaatgttataatgtatgttggctctgctcaa
gcccgtactgttataagggaacatgaattttattttcccaaacgtcataaaaaaatcaag
aaaaagaaatatggtcagattgttagtgaaagcaaacaagaaagaattaaatttgatgtt
ctcctaacatcatatgagatgatcaacttggacacagcgtcattgaaaccaattaaatgg
gaatgcatgattgttgatgaaggccatcgtctcaaaaataaggattcaaagttgttttct
tccttgaagcaatatactagtaaccatcgtgtgcttttgactggaacaccacttcagaac
aatctggatgaacttttcatgctgatgcacttccttgatgctgggaagtttggaagctta
gaggagttccaggaggagtttaaggacatcaatcaagaagagcagattatgagactacac
aaaatgttggctccacatctacttagaagggttaagaaagatgttatgaaggagttacca
ccaaagaaagaactcatattacgtgttgaactgagtagcaaacagaaagaatactacaag
gcaattcttacccgcaactaccagatattgacccgacgtgggggtgcgcagatctctctt
attaatgttgttatggaattgcggaagctttgttgtcatccatatctcctagagggggtt
gaaccagatatagaggattcaaatgaagcttacagacaacttctggaatcagccggaaaa
ttgcagctgttggacaaaatgatgatgaagcttaaggagcaaggtcatagagttcttata
tattcacagttccaacgcatgcttgatgtactagaagattattgtacttacaagaaatgg
cagtacgaacgtatagatggaaaggttggtggagctgagagacagatacgcatagaccgg
tttaacgccaaaaactcttccagattttgctttttgctgtctactagagctggtggcttg
ggaatcaaccttgcaactgctgacacagtcatcatatacgacagcgattggaatccgcat
gctgatctacaggcaatggctagagctcatcgacttggtcagacaaacaaggtgatgatt
tataggctcataacgcgaggtactattgaagaacgaatgatgcagatgacaaagaagaaa
atgattttagagcatcttgttgttggaaagttgaagacgcaaaacatcaaccaggaagag
ttggatgacatcattagatatgggtcaaaggagctctttgctgatgaaaatgatgaagca
ggaaaatctcgccaaatccattacgatgatgctgctattgatagattactcgatcgtgat
catgttgatgctgaagaggcttcattggatgatgaagaggaagatggatttttgaaggct
ttcaaggtggcaaattttgaatatattgatgaagcagatgccatagcagaagaaaaggca
cagaaagcagccatggaaaacaaatcttcaatgagcaattctgaaagatcaaacttttgg
gaagagttgttaaaagacagttatgaagtgcataaagttgaggagttcagtgctttgggc
aaagggaagagaagccgtaagcagatggtatctgttgaagaagatgaccttgctggtctg
gaaggtgtgagttctgagggggaggatgacaattatgaagctgatttgactgatggtgat
acgacttcatctggaactcagagaaggccttacagaaagagagctcgcgggagctcggaa
ccagcacctttgatggaaggtgaaggtagatctttcagagtactgggattcaaccagaat
cagagggctacgtttgtgcagatactcatgaggtttggtcttggggattttgactggaag
gagtttgtcccgcgtttaaaacagaagacatttgaagaaataagagattatgggactctc
ttcctaaggcatgttgttgaagatttaaatgactcgcccaccttttcagatggtgtgcca
aaggagggacttcgaattccagacgtactggtccgtattgcaattttgacgttgatacaa
gaaaggatccagtatgcagaagaaaatcctggcagtcctctttatggtgatgatattgtt
gcacgctatccagccttgaagggtggcaaattttggaaagaggaacatgatctaatatta
ctgcgtgctgttctcaagcatggatatggaagatggcaagctattgttgatgacaaggac
ctgaggattcaggaagttatatgcaaagagctgaatcttccatttataaatctacctgcc
ccaggacaatcaagttctcaaacacaaaatggggcaactacatctaatgtggaaggacct
ggcaacaacagtctgggtgctggggatgacaggacaactgacatggctcagggaccagtg
gatcctgcaagccattcgcagttatatcaagacccttctatactctaccacttcagagat
atgcagagaaggcaggttgagtttgtcaagaaaagggtactcctcttggagaagggccat
aatgcggagtaccaaaaaatttacgatgctgaaactggaaacagtcctactgaagtggct
gagaatgtacctgggggctcgggcgtcgaagttcctagcactatggatatagacgatgac
tcaattgatcagttgcctgcattagaagtaattgcaccagaagatttctcattgcctggt
gactctgaacgaactgaactagccgttcggtacaatgagatgtgcaagattctggatcaa
aacgtaccagaatcagcgcaagcatatctaaacaatcctgtgaatccctccctgaggaag
agcctgcagccgctggagacattgtttgaaaatataagcgtggcgctttccccaaacttg
aagcagtcaactactcaacaaattgacctcgagcaagctaccggagcaggtattatgatc
agggagtctatggagcagaaacgtccaggagacagcaatgatgaagtagaacctgacaca
agcttggctgctaccgcgcctgctcaaaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (44)   

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