KEGG   Campylobacter peloridis: CPEL_1051
Entry
CPEL_1051         CDS       T03559                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cpel  Campylobacter peloridis
Pathway
cpel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CPEL_1051 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpel03019]
    CPEL_1051 (rnr)
   03016 Transfer RNA biogenesis [BR:cpel03016]
    CPEL_1051 (rnr)
Enzymes [BR:cpel01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CPEL_1051 (rnr)
Messenger RNA biogenesis [BR:cpel03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CPEL_1051 (rnr)
Transfer RNA biogenesis [BR:cpel03016]
 Prokaryotic type
  tRNA degradation factors
   CPEL_1051 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB
Other DBs
NCBI-ProteinID: AJC84869
Position
1082492..1084432
AA seq 646 aa
MKELFNQLSYGLNANEITNKNKQIIRELLTCEIIKFYKNKYYLKDGFTFGKIDISANGTG
FLQSYDIAFKRDLLIENKNLKGANYADIVVAKLLPLKKKRPSAKVVLILKRAHETSLVVT
KKYGEAVLGVNIQTGLACALKASQKSLKTLPLGTILKIENHNNNITEVIGHIDDDFVDEK
ISLALFNKNAIFDNLCENEAKAYGNSVDASMYPSRKDLRNLNFCTIDPVDAKDFDDAIYY
DKNEHAIYVAIADVSAYVHAYSAIDKEARARGFSIYFPHIAIPMLPRALSENICSLKPNE
DRLAFCFKISLDQNNEVIKEELFEAIINSKRRFNYDEVDEYLKTHQNLNNINWLYDAFKI
TQALRKKRLKNACEFKTQELRMTLDENNKLISTRLESDTASHNLIEDCMLLANKAAAKLI
DIGIFRNHLSPDYKKINQLLADLSTLSIDITPKNNAIELIKDIQALANELNIREEVDKLI
IKAQKKAEYASENAGHFGLGFDKYTHFTSPIRRYSDLILHRLLKAKINQDEKMFNYLLLN
IQSTCEQLSILEREADKVAWDFMDRKFARWASKNLGKKFKALVVENQNTLEVKLDDEIKG
ALVIIIGSRANLLERVEVEICEVDIINAKIFGKITKHFNLEREKNV
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgaaagaattatttaatcaactaagctatggtttaaatgctaatgaaattaccaataaa
aacaagcaaatcattagagaattattaacttgtgagattattaaattttataaaaataaa
tactatttaaaagatggttttacttttggaaaaatagacatttctgctaatggaacagga
tttttacaaagctatgatattgcttttaaaagagatttgctaattgaaaataaaaattta
aaaggggcaaattatgctgatatagttgtagcaaaattactccctcttaaaaaaaagcgt
cctagtgctaaggttgttttgatactaaaacgagcccatgaaacctctttagttgtaact
aaaaaatacggcgaagctgtgcttggggttaatatacaaactggacttgcatgtgcttta
aaagcctctcaaaaatcattaaaaactttgcctttagggactattttaaaaatagaaaat
cacaataacaacatcacagaagttatagggcatattgatgatgattttgttgatgaaaaa
atttctttagcactttttaacaaaaatgcaatttttgataatttatgtgaaaatgaagct
aaagcttatggaaatagcgtagatgcaagtatgtatccatcaagaaaggatcttagaaat
ttaaatttttgcaccatagatccagttgatgcaaaagattttgatgatgctatttattat
gataaaaacgaacatgctatttatgtggctatagctgatgtgagtgcttatgtgcatgca
tatagcgctattgataaagaagcaagagctaggggtttttctatttattttcctcatatt
gctatacctatgcttccaagggctttaagtgaaaatatttgctctttaaaacccaatgaa
gatcgcctagccttttgttttaaaataagtttagatcaaaacaatgaagtaatcaaagaa
gagctttttgaagctattattaattcaaaacgccgttttaattatgatgaagttgatgag
tatttaaaaacgcatcaaaatttaaacaatatcaattggctttatgatgcttttaaaatc
acacaagctttacgcaaaaagcgtttaaaaaatgcatgcgagtttaaaacccaagaactt
agaatgactttagatgaaaataacaaactcataagcacaagattagaaagtgatacagct
tcacataatctaatagaagattgcatgcttttagccaataaagcagcagcaaaacttata
gatataggaatttttagaaaccatttaagtcctgattataaaaaaatcaatcaattacta
gctgatctttcaactcttagtatagatataacccctaaaaataacgctatagagcttatt
aaggatatacaagctttagcaaatgagttaaatataagagaagaggttgataaactcatt
atcaaagctcaaaaaaaagcagaatatgctagcgaaaatgctggacattttggtttgggt
tttgataaatacactcattttacaagccctattagaaggtattcagatcttattttacat
agacttttaaaggcaaaaatcaatcaagatgagaaaatgtttaattatttgcttttaaat
atacaaagtacttgtgagcaattaagtattttagaaagagaggcagataaagttgcttgg
gattttatggatagaaaatttgcaagatgggcaagtaaaaatttaggaaaaaaattcaag
gccttggttgtggaaaatcaaaatactttagaagtaaaattagatgatgaaatcaaaggg
gctttggttatcatcataggttcaagagcaaatttgttagaacgcgtagaagttgaaatt
tgcgaagtagatattataaatgctaaaatttttggaaaaataactaagcattttaactta
gaaagagaaaaaaatgtataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system