KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111776849
Entry
111776849         CDS       T05351                                 
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-1-like
  KO
K15322  tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cpep03016]
    111776849
Enzymes [BR:cpep01000]
 4. Lyases
  4.6  Phosphorus-oxygen lyases
   4.6.1  Phosphorus-oxygen lyases (only sub-subclass identified to date)
    4.6.1.16  tRNA-intron lyase
     111776849
Transfer RNA biogenesis [BR:cpep03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing endonuclease complex
    111776849
SSDB
Motif
Pfam: tRNA_int_endo tRNA_int_endo_N AHSP
Other DBs
NCBI-GeneID: 111776849
NCBI-ProteinID: XP_023512007
Position
LG16:6389639..6392651
AA seq 239 aa
MRPRWKGKASEARALADPMSKIVLQLQSLLTQSDAQGLLSGCSILYQADEEQTDLLNRAC
FGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSQKATFPE
FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENVRLRVWS
DFLCTIRLCGSVAKTLLVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
NT seq 720 nt   +upstreamnt  +downstreamnt
atgaggccgagatggaaagggaaggcttcagaagccagagctctagcagatcccatgtcg
aagattgtacttcagcttcaatctcttctgacacagtcggacgcgcaaggattattatct
ggttgtagtatactttatcaagccgatgaagaacaaaccgatcttcttaatcgcgcttgt
ttcggccgaacaattattaccgccgagaaggataagcaatggtttcaattcggaatggag
gaggctttttacttgtcctatcatttgaattgcctcaaaattgtcgatggacaagatcgt
gaaaagaatgttcaagagctgtggcaggatatgaagtcgcaaaaggctacattccctgag
ttttacatggcttatcaacatcttcgaatgaagaattggattgtgagacctggatctcaa
tatggcgttgattttgtggcttatcgtcaccatccggctctcgtccactctgaatttgct
gttcttgtgttgtccgaaggagaaggcagcaatgaaaatgtgcgattaagagtttggtct
gattttttatgcacaattcggctttgtggaagcgttgcaaaaacgctgctagttcttagc
gtcaatgataatggaagcggttctgtttctccttcttgtttggacaattactccattgaa
gagcgcacagttacaagatggagtccagaacagtgccgcgaaaatcctgaaaaagtgtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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