KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111778441
Entry
111778441         CDS       T05351                                 
Name
(RefSeq) ISWI chromatin-remodeling complex ATPase CHR11-like isoform X1
  KO
K11654  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111778441
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpep03021]
    111778441
   03036 Chromosome and associated proteins [BR:cpep03036]
    111778441
Transcription machinery [BR:cpep03021]
 Eukaryotic type
  RNA polymerase I system
   Other transcription-related factors
    NoRC (nucleolar remodeling complex)
     111778441
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Chromatin remodeling factors
   CHRAC complex
    111778441
   RSF complex
    111778441
   WICH complex
    111778441
   B-WICH complex
    111778441
   NORC complex
    111778441
   BRF complex
    111778441
   NuRF complex (fruit fly)
    111778441
SSDB
Motif
Pfam: SNF2-rel_dom SLIDE Helicase_C ResIII HAND Myb_DNA-binding HDA2-3 DEAD DBINO AAA_14
Other DBs
NCBI-GeneID: 111778441
NCBI-ProteinID: XP_023514037
Position
LG17:38363..46426
AA seq 1073 aa
MAKPSKRQVSSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSD
NDASPVENGEEEDGSNDGDDDKVDISRREKARLKEMQQMKKQKIQDMLDAQNAAIDADMN
NKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKITEEEEDEEYLKEEEDGLS
GTGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYL
HEYRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERRNIRENLLVAGKFDV
CVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQN
NLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK
GLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQ
GAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGY
YYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQ
VDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVN
KDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDE
TAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPR
IPRMPQLHDFQFFNTQRLSELYEKEVRYLMLTHQKNQLKDTIDVEETEDVGDPLTAEELE
EKEKLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIALEMEGKTEEEVERYANVFKERYK
ELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECD
RFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEY
DERERQARKEKKLAKSMTPSKRALARQSESPTNLKKRKQLSKDDYVNSGKRRK
NT seq 3222 nt   +upstreamnt  +downstreamnt
atggcgaaaccctcgaaacgacaggtgtcttctgatgaagccatgtccaatggctcgagc
tcgtcggaggaagaggagcaaactaacgagcagatcaatgaggaggaggacgaggaggag
ctcgaagcggtagctcgctcggcaggctctgacgaggatgaagctgccgaggattcagat
aacgatgcatcacctgtcgaaaatggcgaggaagaggacggaagtaacgacggcgatgat
gataaagtcgatattagcaggcgtgaaaaggccagactaaaagaaatgcaacaaatgaag
aagcagaagattcaggatatgttggatgcacaaaatgctgcaattgatgctgatatgaat
aataaggggaagggacgcttgaaatatcttctgcaacaaactgagatatttgctcatttt
gctaaaggcgagcattcttcttctcaaaagaaaacgaaaggaaggggtcgtcatgcatca
aagataactgaagaggaagaagatgaagaataccttaaagaggaagaagatggtttatct
gggactgggaacactcgtctccttacacaaccatcttgtatccaagggaaaatgagggat
tatcaactagctgggttaaattggctcattcgactgtatgagaatggcatcaatggaatc
cttgcagatgagatggggcttggcaagacactacaaaccatctctctgttgggctatctt
cacgagtacagaggcataacaggcccccatatggtagttgcaccaaaatctaccctggga
aactggatgaatgaaattcgtcgtttttgccctatcttgcgagctgtaaagtttcttgga
aatcctgatgaaaggaggaatatacgggaaaatttactggtagctgggaagtttgatgtc
tgtgttaccagtttcgaaatggccatcaaggagaagtcttgcttgcgtcgttttagttgg
cgctacattattattgatgaagctcatcgaattaagaatgagaattccctcctttcaaag
acaatgaggctttataataccaactatcgtcttctaatcactggcacgccacttcagaac
aatcttcatgaactgtggtctctcctcaattttcttttgcctgaaatatttagttcagct
gagactttcgatgaatggtttcaaatttctggggaaaatgatcagcaggaggttgttcaa
caacttcacaaggtccttcgaccttttcttcttcggaggctgaaatcggatgttgaaaaa
ggtttaccaccaaaaaaggaaacaatacttaaagtaggcatgtcacagatgcaaaagcaa
tactatcgtgctttgctccagaaggatcttgaagttgttaatgctggtggtgagcgtaaa
cggcttcttaatatagctatgcagctccggaaatgttgtaatcacccatatttatttcaa
ggtgctgaacctgggcctccttacaccactggagatcatcttattacaagtgctggtaaa
atggttcttttggacaagttgcttccaaagctgaaagagcgtgattctagagtcctaata
ttttcgcagatgacaagactgttggacattcttgaagattatttaatgtttcgtggatac
tactactgtcggattgatggtaacactggtggtgaagatcgtgatgcatccattgatgct
ttcaacaagccaggaagtgaaaaatttgttttcttactttcaaccagagctggaggtctt
ggtattaatcttgctactgcagatgtagtcattctttacgacagtgactggaatcctcaa
gttgatctgcaagcccaagatcgtgctcatagaattggtcagaagaaggaagttcaagtg
ttccggttttgcactgagtataccattgaggaaaaagttattgaaagggcttacaagaaa
cttgcccttgatgctttggtgattcaacaaggacgcttagcagagcagaaaactgtcaac
aaggatgagctacttcaaatggtgaggtttggtgctgagatggttttcagttccaaagat
agcaccatcacagatgaggacattgacagaatcattgcaaaaggagaagcagcaacagca
gagcttgatgcaaagatgaagaaatttacagaagatgccattaaatttaagatggatgaa
actgctgaattgtatgatttcgacgatgagaaggatgaaaataaatttgacttcaagaaa
attgttagtgaaaattggattgaaccacctaaaagggagcggaagcgcaattactcggaa
tcggaatactttaagcaaacaatgcggcagggtggtccaacaaaaccaaaggagcccagg
attcctcgcatgcctcagttgcacgatttccagtttttcaacacacaaaggttgagtgaa
ctatatgaaaaagaagtgcggtatctcatgctaacacatcaaaagaatcagttgaaagat
acaatagatgttgaggagactgaagatgtgggtgatccattgacggccgaagaactggaa
gaaaaagaaaaactcttagaggaaggattttcttcatggagtcgcagagatttcaataca
tttattagggcttgtgagaagtatgggcgaaacgatattaaaagtattgctttggagatg
gaaggaaaaacagaagaagaagttgagagatatgcaaatgtctttaaagagagatacaag
gagttaaatgattatgatagaatcatcaagaacatagaaagaggggaagctaggatttct
cgcaaggatgaaataatgaaagctatcggcaagaaactcgatcgctacaaaaatccatgg
ctggagctcaagatccagtatggccagaataaagggaagttgtacaacgaagaatgtgat
cgtttcatgatatgcatggttcacaagctcggttacgggaactgggacgaactgaaagca
gcatttcgtacatcacccttgtttcgctttgattggtttatcaagtcgcgaacaacacaa
gaacttgcaaggaggtgcgataccttaatccggttagtcgagaaggaaaaccaggaatat
gatgaacgggaaagacaggcccgtaaagaaaagaagcttgccaagagcatgacgccatcg
aaacgtgccttggctaggcagtccgagagcccaactaacctaaagaagcggaagcaatta
tctaaggatgattatgtgaactctggaaagaggaggaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (23)   

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