KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111779936
Entry
111779936         CDS       T05351                                 
Name
(RefSeq) TATA-box-binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    111779936
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cpep03000]
    111779936
   03021 Transcription machinery [BR:cpep03021]
    111779936
Transcription factors [BR:cpep03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    111779936
Transcription machinery [BR:cpep03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     111779936
  RNA polymerase III system
    TFIIIB
     111779936
  RNA polymerase I system
    SL1/TIF-1B
     111779936
SSDB
Motif
Pfam: TBP DUF3378 DUF4295
Other DBs
NCBI-GeneID: 111779936
NCBI-ProteinID: XP_023515908
Position
LG18:complement(4353260..4359432)
AA seq 200 aa
MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV
IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG
SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREE
TYTAFENIYPVLTEFRKNQQ
NT seq 603 nt   +upstreamnt  +downstreamnt
atggcagatcaaggcttggaaggagcccaacccgttgatcttaaaaagcatccttctggg
attgtacctactcttcagaacattgtgtcaacagtcaatctggactgcaagttggatctg
aaggccattgctctgcaagctcgcaatgctgaatacaatcccaagcgttttgctgctgtt
atcatgagaataagggagccaaaaaccacagcactgatatttgcatctggaaagatggtc
tgtactggagctaagagcgaacaacaatcaaaattagctgcaagaaagtacgcccgtata
atccaaaaacttggatttcctgccaagtttaaggattttaagattcagaatattgttggc
tcatgtgatgttaagttccccataagactcgagggtcttgcatattcacacggtgccttt
tcaagttacgaaccagagttatttcctggattgatttatcggatgaaacaaccaaagatt
gtgcttctcattttcgtttctggaaaaatagttctcactggggctaaggtgagagaggag
acatacacagcatttgagaacatatacccagtgcttacagagttcaggaaaaaccagcaa
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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