KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111780978
Entry
111780978         CDS       T05351                                 
Name
(RefSeq) autophagy-related protein 13b-like
  KO
K08331  autophagy-related protein 13
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    111780978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cpep04131]
    111780978
   03029 Mitochondrial biogenesis [BR:cpep03029]
    111780978
Membrane trafficking [BR:cpep04131]
 Autophagy
  Autophagosome formation proteins
   ULK complex
    111780978
   Atg1 complex
    111780978
Mitochondrial biogenesis [BR:cpep03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-independent mechanism factors
    111780978
SSDB
Motif
Pfam: ATG13
Other DBs
NCBI-GeneID: 111780978
NCBI-ProteinID: XP_023517129
Position
LG19:complement(4595496..4599230)
AA seq 620 aa
MNSNSSHNTHSETAKVEQILTEFFPKTLQIILESRSPCSISSRNFSGEQVLSSPSSSSSS
SSSMRPRDKWFNLALRECSATLENIDLWRQSYHEPMVIDVVLVQRQFGLDSVDVSPRKDL
VRNLSMKEFGCQSMSEKVVERWMVHYESRKNRDSNSGSRRSSNSTAHTYKKTILLLRSLY
ALLRLLPAHKVFQDISSSSQIHPFTLAHRVSSFVEPFSRREEAEMQHFVFTPVDTSCGRL
CLSVLYRSSLSEITSEPSTPMSPQVIPEYVGSPLADPLKRFPTLPVTIATSHGSSSSLPF
SRRHSWSYDQCRPSPPISFSPSPTNSESHATISNPAFCRLPPSSLPSQMVMGHKDNMNYD
EYYPSLVFSPSPPIGIPVKRLPNGRLQSESAPQSAPTAKLPHSPALLSRPNLPPSPPLKA
FGPGIPRINRDVGPLQAGSAFGKSSSFGRDESRRISGWRVSSNNSPISRSPSTSFPDDLD
DPEFPCPFDDDNEMTDGGSRPESFDPKGSSNLCDMLEPSGFFPIRKSQDAAVGALVRMLQ
KAPPLRQDFTNSSPNLSRPPTPGSSSSRNIQQQGTQICETIAPSKGRYAASSSITASKTT
GDALEELESYREMKNLLLRQ
NT seq 1863 nt   +upstreamnt  +downstreamnt
atgaattccaattcttctcacaatactcattccgaaactgccaaagtagagcaaatttta
actgaattcttccctaaaaccttacaaattatacttgaatccaggtccccttgtagtatt
tcatcgcgtaattttagtggcgaacaagttttgtcttccccatcttcctcttcctcctcc
tcctctagtatgaggccgagggataaatggtttaatctggcccttcgtgaatgctctgct
acgttagagaatattgatctctggcgtcagagctatcacgaacccatggtcatagatgtt
gtcctggtccagagacaatttggtttggactcggttgatgtttctcctaggaaagatctt
gttaggaacttgtccatgaaggagtttggatgtcagtccatgagtgaaaaggttgtcgag
agatggatggtgcattatgaaagtaggaagaatcgggatagtaattcaggtagcagaagg
tcgagtaatagtactgctcatacctataagaaaaccattttactcttgagatctttatat
gcccttttgaggcttttacctgcacataaggtttttcaggatattagttcatctagtcaa
attcatccctttactcttgctcatcgtgtgtcgtcctttgtcgagccgttctctcggaga
gaagaggctgaaatgcagcattttgtgttcactcctgtggatacttcttgtggtagactc
tgtctctcggtgttataccgctcgtcgctctctgaaataacctctgaaccatcaactcca
atgtctcctcaagtaattcctgaatatgttgggagcccgttagccgatccattgaaaagg
tttccaacacttcctgtaacaatagcaacatctcatggatcttcatcgtcgttgccattc
tcaagacgacatagttggagttatgaccaatgtagaccctcccccccaatctcgttttct
ccttcaccaacgaattcagagtctcatgctacaatttcaaatccagccttttgtcgtttg
cctccttcaagcttgccttcacaaatggttatgggacataaagataatatgaattatgat
gaatattatccttccctcgtcttttcgccctcaccacccattggcattcctgtaaagcga
ttaccaaacggtcgattgcaatctgaaagcgctcctcaaagtgcacctacagcaaagctt
ccccactcccctgcattgttaagcagaccgaatttgccgccatcgcctcccctcaaagcg
tttggaccaggtattcctagaatcaatagagatgttggtccattgcaggcaggctctgca
tttggaaagtcatcatctttcggaagagatgaaagccgaagaatttcgggctggagggta
tcatcaaataactcaccgatttctagaagtcccagtacatcttttccagatgatttagat
gatccagagtttccttgcccctttgatgatgataatgagatgacagatggaggtagcaga
cccgagtcattcgaccctaaaggcagcagcaatctctgcgacatgctcgaacccagtgga
tttttcccaatccgaaaatcacaagacgcagctgttggcgccctagtacgtatgcttcaa
aaggctccaccacttcgccaagacttcactaattcaagcccgaatctctcacgacccccg
acacctggttcctcaagcagcagaaacatccagcagcagggaacccagatatgtgagacg
atagcgccttcaaagggtcggtacgccgcttcctctagcatcacagcctctaaaactaca
ggtgatgcattggaagaactagagagctacagagagatgaagaatttgcttctcaggcaa
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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