KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111788699
Entry
111788699         CDS       T05351                                 
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
  KO
K15865  threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cpep03016]
    111788699
Enzymes [BR:cpep01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     111788699
Transfer RNA biogenesis [BR:cpep03016]
 Eukaryotic type
  tRNA modification factors
   Methylthiotransferase
    111788699
SSDB
Motif
Pfam: UPF0004 Radical_SAM TRAM TraT
Other DBs
NCBI-GeneID: 111788699
NCBI-ProteinID: XP_023524910
Position
LG02:9513265..9524867
AA seq 633 aa
MEDIEDLLIGGGGAPPGYRLPISAVGVKPKKKNKLKPNPDADDSSSGLFPTQNLLAPKIP
GTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSENPEEADLWLINTCTVKSPSQSAMDT
LITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNR
KTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVNRVRTVINE
GVREIWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDASTMLRIGMTNPPFILEHLKEIA
NVLCHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPGMQVATDIICGF
PGETDEDFCETINLIKEYKLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSVFEA
FTPYNGMEGRVERIWITEIAADGIHLVGHTKGYIQVLVIGPEAMLGTSALVKITSVGRWS
VFGEVIETIVTKHHKTTALEDMPIQAKVPPCSNAHETCACSVEPEACACGAESCCKGPVA
LDEKDDSSRNIPLPEEPKRKNLVEWLLRKRKSHVPKREERESPVVSERKQASAGGSMSEW
GVVDRILVGGILISIFTIVGLLFHLGSTTLSSS
NT seq 1902 nt   +upstreamnt  +downstreamnt
atggaagacatagaagacctgctcatcggcggcggcggagctccccctggttaccgactt
ccaatatccgcagtcggtgtaaagccgaagaaaaagaataagctgaaacctaatcctgat
gctgatgattccagcagcgggctttttccaacccaaaatctacttgcacctaagattcca
ggcactcagacaatttatgttaaaacctttggatgttctcacaaccagagtgacagtgaa
tatatggctggtcagctttcagcatttggttatttgttaagcgagaatcctgaagaggca
gacttgtggctcataaatacttgcacagttaaatcccctagtcaatctgctatggacact
ctaataacaaaatgcaaaaatgcgaaaaagcctcttgtggtagctgggtgtgtaccacaa
ggtagtcgagatttaaaagagctagaaggggtcagtatagtaggagtccagcagattgac
cgtgtggtagaagttgtggaagagacactgaagggtcatgaagtaaggctattgaatcgc
aagacattgccagcgcttgacctcccaaaagtgagaaagaataagttcattgaaatacta
ccaatcaatgttggctgtttaggtgcttgcacttattgcaagacaaaacatgctcgtggt
cacttgggaagttacacagtagatagccttgtaaatcgtgtaagaactgtcatcaatgaa
ggagtccgggaaatatggttgagcagtgaagatactggggcatatggccgtgacattggg
gtcaatcttccaattttgttaaatgcaattgttgccgagcttcctcctgatgcaagcaca
atgcttcggattgggatgacaaatcctcctttcattcttgagcatttgaaagagatagct
aatgttttgtgtcatccatgtgtatactccttcttgcatgtgccagttcaatctgggagt
gacacaatcttaagtgcaatgaatcgagaatatacagtcagtgagttcaggactgtagta
gataccttaactgagcttgttcctgggatgcaggtcgcaactgatataatatgtggattt
cctggggaaacggatgaagatttttgtgaaactatcaaccttattaaagagtacaaatta
ccccaagttcatatctcacagttctatcctcgaccagggacacctgctgctaggatgaag
aaagttccaagtgctattgtcaagaaacgaagccgcgagttgacttcggtttttgaagct
tttactccatataatggaatggagggcagagtggaaagaatttggattacagaaattgca
gctgatggaattcacttggttggccataccaagggatacatacaggtgctagtaattggc
cctgaagctatgctgggaacttctgctttggtgaagataacatccgttggaagatggtct
gttttcggggaagtgattgaaaccatcgtcaccaaacatcataaaacaactgctctcgaa
gacatgccgatccaagccaaagttcctccctgctctaatgctcatgaaacatgtgcatgt
tctgtggaacccgaagcttgcgcttgtggagcagaaagctgctgcaaaggaccagttgct
ctggatgagaaagatgattcttcaagaaatatcccactgcctgaagagcccaaacggaag
aatctggttgagtggctattgcggaaacggaagagccacgtgcccaaaagggaggaaagg
gaaagtccggtagtgtccgagagaaagcaggcgtcggctggaggaagcatgagtgagtgg
ggcgtcgttgataggattcttgttggaggaatactaatcagtatcttcacaattgttggt
ctgctgtttcatcttggatccacgacactctcctccagttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system