KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111789727
Entry
111789727         CDS       T05351                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1-like
  KO
K11982  E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cpep04131]
    111789727
   04121 Ubiquitin system [BR:cpep04121]
    111789727
Enzymes [BR:cpep01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     111789727
Membrane trafficking [BR:cpep04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab associated proteins
    111789727
Ubiquitin system [BR:cpep04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    111789727
SSDB
Motif
Pfam: DUF1117 zf-RING_2 zf-rbx1 zf-C3HC4_2 zf-C3HC4 zf-RING_11 zf-RING_UBOX zf-RING_5 zf-ANAPC11 zf-C3HC4_3 zf-RING_16 CxC4 zf-C3H2C3 Prok-RING_4 zf-P11
Other DBs
NCBI-GeneID: 111789727
NCBI-ProteinID: XP_023526166
Position
LG03:539145..540904
AA seq 316 aa
MNHDDASDLDPSFVPRLRRSRRNGEDRSSFNRIIVLRDPSNSGAISNNGVGGGGNYEIYY
DDGTGASLRSLPSNISEFLMGSGIDRLLNQLAQLEVNGVGPLEHPPASKAAIESLPVVKI
LASDVPLESHCAVCKEPFELDSEARQMPCKHIYHSDCIFPWLSIRNSCPVCRHQLPTDAH
GSGRSSPASAEEVVGLTIWRLPGGGFAVGRFTWGRGAAEHDLPVVYTEIDGGFSTTSGVP
RSITWASSGIRSSESGGFRRIFRNFFSFFGRFRSTSRRSGSVTGLIRRSFSTTLFNRRSR
RNNHSMVSDANYTFSA
NT seq 951 nt   +upstreamnt  +downstreamnt
atgaaccacgatgatgcttctgacctagacccttccttcgtcccaagattgcgtcgcagc
cgaagaaacggtgaggatcgctcctctttcaatcgtatcattgttctacgcgatccctct
aattcgggcgctattagtaataatggtgttggaggtggaggaaattatgagatttattat
gatgatggtacgggggctagtctccgttccttgccttctaatatatccgagttcttgatg
ggatcggggatcgatcgccttctcaatcaattggcgcaactggaggtgaacggggttggc
ccattggaacacccaccggcgtcgaaggctgcaattgaatctttgcctgtggttaagatt
cttgctagcgatgtgcctttggaatcacattgtgcggtctgtaaggaaccatttgagctc
gactctgaggctcgacagatgccgtgtaagcatatttaccattcggattgtatatttcct
tggctttctatccggaattcctgtcctgtttgtcgccaccaattgcctaccgatgcgcat
ggcagtggcaggagctccccagcttctgctgaagaagttgttggattaacaatttggagg
cttcccggtgggggatttgctgttggaaggttcacttggggaaggggagctgcagaacat
gaccttcctgttgtttacactgaaattgatggtgggtttagtaccaccagcggtgttcca
aggagtattacatgggcgtcaagtgggataagatcaagtgaaagtggtggatttcgtcgt
atttttcgcaatttcttctccttttttgggaggtttagaagtacatcccgtcgttctggt
tcagttactggtttaattagaaggagcttctctactaccttattcaacagacgctcaagg
aggaataatcactctatggtgtcggacgcaaactatacattttctgcttag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (27)   

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