KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111791429
Entry
111791429         CDS       T05351                                 
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    111791429
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpep03032]
    111791429
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111791429
Enzymes [BR:cpep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     111791429
DNA replication proteins [BR:cpep03032]
 Eukaryotic type
  DNA Topoisomerases
   111791429
DNA repair and recombination proteins [BR:cpep03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     111791429
   FA (Fanconi anemia) pathway
     111791429
SSDB
Motif
Pfam: Topoisom_bac Toprim
Other DBs
NCBI-GeneID: 111791429
NCBI-ProteinID: XP_023528530
Position
LG03:complement(10371553..10390005)
AA seq 868 aa
MVASSVLMVAEKPSIALSIASALSHGQMSTRKGSTEVHEFDGRFLGHHAHYKVTSVIGHV
FSIDFPARFQDWKATDPLDLFQASVIKAESNPKAHIRQHLSREARGCDCLVLWLDCDREG
ENICFEVIECTGFGGNDYRKKVYRARFSSVTEKDILKALDNLVEPNRNEALAVDARQEID
LKVGVSFTRFQTTFFQGKYGNLDSRLISYGPCQTPTLGFCVQRHLQITTFKPEKFWSVCP
YIMQNGYELNLDWERGRLFDCDVATMFQKRVMEDGIAEVTQISEKQESKVRPSGLNTVNL
LKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLHSLVKNPEWGDY
VRMLLSDGYSKPRSGTDVGDHPPITPMSLATEDMVGRDAWRLYQYVCQHFIGSLSSDCKY
IRTKIQFSIAGEIFNCTGSSVMVKGFTSIMPWLAVNEKKLPQFLKGQKIEVAKVDLYQGN
TSPPDYLSESELISLMEKHGIGTDASIPVHINNIGERNYVQVQAGRRLVPTNLGITLIRG
YQCIDPDLCLPDIRSFIEQQITFVAKGQADHFSVVQNVLQQFKQKYSYFVKKIDHMDALF
EAQFSPLAESGRALSKCGKCLRYMKFISSQPQRLYCGTCEEVYYLPQRGAIKLYKELTCP
LDNFELLIFSLPGPEGKSFPLCPYCYNSPPFEGIDTLYGAAKTNPSSGASSKGMGMPCFL
CPHPTCRHSLITQGVCACPECSGTLVLDPVGAPNWKLNCNKCNCLVFLPQGAHRIATTNE
KCAECDSTIIEVDFNKKTTPLEGGATLFVGCILCDEFLHSLLEMKHGKSFFRGRGSRGRG
RGRGRGRGRGRGRSSGKLMDPKMSFRDF
NT seq 2607 nt   +upstreamnt  +downstreamnt
atggtcgcttcctcggttcttatggtggctgagaagcctagcattgcgctctcgattgct
tctgcactctctcatggccaaatgtctacaagaaagggtagcacagaggtacatgaattc
gatgggagatttcttgggcatcatgctcattacaaagtgacatcggttatcggacatgtt
ttcagtatagatttcccagctagatttcaagattggaaggcaactgatcctttggatctt
tttcaagcttcagtaattaaggcagaatcaaacccaaaggctcacatacgtcaacattta
agtcgagaagcccgtggttgtgattgtttggttttatggttggattgtgatcgtgaagga
gagaatatttgttttgaagttattgaatgcactggatttggtggcaatgattataggaaa
aaagtgtatcgggcaaggttttcttccgttactgaaaaagatattctgaaggctttggat
aaccttgttgaacctaatagaaatgaggcactggctgtagatgctcgacaagagatagat
ttgaaagttggagtatcttttacacgatttcagactacattttttcagggaaaatatggg
aaccttgattccagactcatctcctatgggccatgccaaactcccacgcttgggttttgt
gtacagcgtcatttgcaaataactacgtttaagccagaaaaattttggtctgtgtgccct
tatattatgcaaaatggctatgaacttaatctagactgggagcgtggcaggctatttgac
tgtgatgttgctacaatgtttcaaaagcgagtaatggaagatggaattgcagaagtaaca
caaatatcagagaagcaagaaagcaaagttcgaccttctggactaaatacagttaacctt
ctgaaggttgcttcaagcgcactaggatacggacctcaaatggcaatgcaactagctgaa
cgattgtatacccaagggttcatcagctatccacgtacagaaagtacggcttatccttct
tcatttgacttcaaaggcactctacattccctagtgaaaaatccagaatggggtgattat
gtaaggatgcttctatccgatggatacagtaagccacgatcaggaactgatgtaggtgat
catcctcctattactccaatgtctttagcaactgaagacatggtggggagagatgcttgg
agattgtaccaatacgtgtgtcaacacttcattgggtctctatcatctgactgcaagtat
attaggacgaagatacagttttcaatcgctggagaaatattcaattgtactgggtccagt
gttatggtaaaaggattcacctccattatgccatggttggcagtaaatgaaaaaaagtta
cctcagtttctgaagggacagaaaatagaagttgcaaaagtggatctttatcaggggaac
acctcgcctcctgattatttaagtgagagtgagttgatttctctcatggagaagcatgga
ataggcacggatgcatcaatacctgtacacattaacaacataggcgagcgcaactatgtg
caggttcaagctgggaggaggttggttccaactaacttgggcatcaccttaatcagaggt
tatcagtgtattgatccagatctctgtttaccagatattagaagtttcatcgagcaacag
atcacttttgttgccaaaggtcaagcagatcattttagtgttgtgcagaatgtactgcaa
cagttcaagcaaaagtatagctacttcgttaagaagattgatcatatggatgctctgttt
gaagcacaattttctcctcttgcggagtcgggacgtgctttgagcaaatgtggcaaatgc
ctacgttatatgaagtttatttcttcccaaccacagcgcctgtactgtggtacatgtgag
gaggtttattatcttcctcaaaggggagcaataaagctgtacaaggaacttacatgccct
ttggataactttgagctcttgattttttccttacctggtccagaaggtaagtcatttcct
ctttgcccatactgctacaatagtcctccattcgagggtatcgacacattatatggtgct
gctaaaaccaacccgagttctggagcatcgagcaagggaatgggcatgccatgcttcctg
tgcccgcacccaacatgtcgacattctttaataacccaaggagtttgcgcttgcccagaa
tgtagcgggacacttgtgctagatccagtgggtgcacccaactggaaactcaactgcaac
aaatgcaattgtcttgtcttccttcctcagggtgctcataggattgccaccacaaacgag
aagtgtgctgaatgtgactctacaattatagaagtggacttcaacaagaaaactactcca
ttggagggtggagctacattgtttgttgggtgcattctttgcgatgaatttctccattca
cttctggagatgaagcatggaaaatcatttttcagagggagaggttcaagaggaagagga
aggggacggggacggggacggggaaggggaagaggacgtagttctgggaaactgatggac
ccgaaaatgagtttccgagatttctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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