KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111793993
Entry
111793993         CDS       T05351                                 
Name
(RefSeq) FACT complex subunit SSRP1
  KO
K09272  FACT complex subunit SSRP1/POB3
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cpep03000]
    111793993
   03036 Chromosome and associated proteins [BR:cpep03036]
    111793993
Transcription factors [BR:cpep03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG2-related
    111793993
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    FACT complex
     111793993
SSDB
Motif
Pfam: PH1_SSRP1-like POB3_N SSrecog Rttp106-like_middle HMG_box HMG_box_2 HMG_box_5 YL1 YABBY DUF6209 CDC45 DNA_pol_phi
Other DBs
NCBI-GeneID: 111793993
NCBI-ProteinID: XP_023531857
Position
LG04:708271..715223
AA seq 642 aa
MADGQLYNNISLGGRGGTNPGQLKTDQRGIQWKKQGGGKAVELDKEDIIGVTWMKVPRTN
QLGIRVKDGLYYKFIGFRDQDITSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLT
FLVGSKQAFEVSLADVAQTQLQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFV
GDENHPPAQVFRDKIMSMADVSAGIEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN
DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSTLQIG
DELLHTKFKDKLEPSYKGLIHEVFTTILRGLSGAKITRPGKFRSCQDGYAVKSSLKAEDG
VLYPLEKSFFFLPKPPTLLLHDEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ
RNEYHNLFDFISGKGLKIMNLGDAQARDGVAAVLQADDDDAVDPHLERIRNEAGGDESDE
EDSDFVVEKDDGGSPTDDSGGEDSDASVSGGEKEKPGKKEAKKDHSASKPPAKKKPREGT
DDGSKKKKPKKKKDPNAPKRAISGFMFFSKMERENIKKSNPGISFTELGRVLGDKWNKMS
AEEKEPYESKARDDKIRYKEEISGYKNPQPMNIDSGNESDSA
NT seq 1929 nt   +upstreamnt  +downstreamnt
atggctgacggtcagctctacaacaatatctctctcggcggtcgtggaggcactaaccct
ggtcagcttaaaacagatcaaagaggtattcagtggaagaagcaaggaggtggcaaggct
gttgagctggataaagaagacattattggtgtaacatggatgaaggtcccaaggacaaac
cagttgggaattcgggtcaaagatggattatattacaagttcattggattccgcgaccag
gacattactagtttaaccaaatttttccaaagtaattgtggaatagcaccagaggaaaaa
caactttctgtcagcggccgtaattggggtgaagttgatttgaacgggaacatgcttaca
ttcttggttggttcaaagcaagcatttgaagtgtctttagctgatgttgctcaaacacaa
cttcaagggaagaatgatgttatgttagagttccatgtggacgatactacaggagctaat
gagaaagattctctaatggagataagttttcacataccaaataccaatactcaattcgtt
ggtgatgaaaatcatcctcctgctcaggtatttcgtgacaaaatcatgtccatggcggat
gttagtgcgggcattgaggaagctgtggtcacatttgagggtattgctatcctcactcca
aggggtcggtacagtgttgaacttcacctctctttcctgcggctccaaggacaagccaat
gacttcaaaattcaatacagtagtgttgttcggctttttttacttccaaagtccaaccag
ccccatacttttgttgtcgtgactctagatccaccaatccgtaaaggccaaactttatat
cctcatattgttttgcagtttgagactgactatgtggttcaaagcaccttgcaaataggc
gatgaacttctccacacaaagttcaaggacaagttggaaccttcttataaggggctgatt
cacgaggtgtttaccaccatattgcgtggtctatctggtgcaaaaattaccagacctgga
aaattccgcagttgtcaagatggttatgctgtcaagtcatctttgaaggctgaagatggt
gtcttgtatccacttgaaaaaagttttttctttcttcctaaacctcccacccttcttctt
cacgatgagattgactatgttgaatttgagaggcatgctgctggtgggtccaatatgcat
tactttgatcttctcatcagactgaaaactgaacaagaacatctctttagaaatatccag
aggaatgaataccataatctttttgactttatcagcggaaagggtttgaaaatcatgaat
ctgggagatgcccaggctagagatggtgtggcggctgtcctccaagcggatgatgatgat
gccgttgatccacatcttgagcgtattagaaatgaagctggcggagatgagagtgatgaa
gaggattcagattttgtggttgaaaaggatgatgggggttctccaacagatgattcaggt
ggggaggattctgacgctagtgtaagtggaggtgaaaaagagaagcctggaaaaaaggag
gctaaaaaagatcattcagcttccaagccacctgccaagaagaaacctagggaagggact
gatgatggttcaaagaagaaaaagcctaaaaagaaaaaggatccaaatgcaccaaagaga
gcaatatctggtttcatgttcttctctaagatggaaagagagaacataaagaaaagcaat
cctggaatttctttcacggaattagggcgagtacttggagataagtggaataagatgtcg
gctgaagagaaagaaccgtacgaatcgaaggctcgggatgacaaaatacgatacaaggag
gaaatcagtggctataagaatccacagccaatgaatatagattcagggaacgaatctgac
agtgcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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