KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111795674
Entry
111795674         CDS       T05351                                 
Name
(RefSeq) small nuclear ribonucleoprotein SmD1b
  KO
K11087  small nuclear ribonucleoprotein D1
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111795674
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpep03041]
    111795674
   03032 DNA replication proteins [BR:cpep03032]
    111795674
Spliceosome [BR:cpep03041]
 Complex A
  U1 snRNP components
   Sm proteins
    111795674
  U2 snRNP components
    111795674
 Complex B
  U1 snRNP components
    111795674
  U4/U6.U5 tri-snRNP components
    111795674
 Complex C
  U2 snRNP components
    111795674
DNA replication proteins [BR:cpep03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     111795674
SSDB
Motif
Pfam: LSM Gemin7
Other DBs
NCBI-GeneID: 111795674
NCBI-ProteinID: XP_023533992
Position
LG05:59102..61605
AA seq 114 aa
MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
NT seq 345 nt   +upstreamnt  +downstreamnt
atgaagcttgtcaggtttttgatgaagctcaacaatgagacagtttcaatcgagctgaaa
aatggaaccgttgtccatggcaccatcacaggtgtggatatcagcatgaatacacatttg
aaggctgtaaagcttactctaaaggggaaaaatccagttaccatggatcatttaagtgtg
aggggaaacaacatcagatattatattctacctgacagcttgaatcttgagactttactt
gttgaagagacacccagggtcaagcccaagaaaccaactgcagggaagcctttggggcgt
ggacgaggacgaggccgtggtcgtggtcgtggtcgtggacgctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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