KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111796028
Entry
111796028         CDS       T05351                                 
Name
(RefSeq) exosome complex component RRP41-like isoform X1
  KO
K12587  exosome complex component MTR3
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111796028
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111796028
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     111796028
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 111796028
NCBI-ProteinID: XP_023534484
Position
LG05:5018628..5021483
AA seq 259 aa
MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAYAVFRTGAVNAAS
GSAYAEFGNTKVIVSVFGPRESKKAMMYSDIDRLNCSVSYSTFSTPVRGQGSENKEFSSM
LHKALEGAIILEMFPKTTVDVFALVLESGGIDLPVVISCASLALADAGIMLYDLVASVSV
SCFGKNLLIDPMLEEENYEDGSLMITCMPSRCELTQLTITGEWSTAKINEGMQLCVDALC
KLVKIMRSCLKESATISEE
NT seq 780 nt   +upstreamnt  +downstreamnt
atggcaaaaaaagcgacacctgctacgactacgtattctccgtctcctactacccacaaa
accaggccacccatcttcagaagcgacgacgtcgattgggttcgcccagatggccgaggc
ttccaccagtgccgtcctgcttatgcagttttcaggactggtgctgtaaatgctgcttca
ggttcagcttatgcagagtttggtaataccaaggtcattgtttctgtttttggccctaga
gaaagtaagaaagcaatgatgtacagtgatattgaccggctgaattgtagtgtcagttat
tcaacattttcgactccagttcggggacagggatcagaaaacaaggagttctcttcgatg
ctacataaagctttggaaggggcaataatactggagatgttccccaagacaactgttgat
gtatttgccttggtgttggaatctggaggcattgaccttcctgttgtaatatcatgtgct
agtcttgctcttgctgatgcagggattatgctttatgatcttgttgcctcagtttctgtg
agctgctttgggaagaatcttcttattgatcctatgttggaggaggaaaactacgaagat
ggaagtttgatgataacttgtatgccatctcgttgcgaactcactcagctcactatcaca
ggcgagtggtcaactgctaaaattaatgagggtatgcaactttgcgttgatgcgttatgt
aagcttgtgaagatcatgcggtcatgtttgaaggaatctgccaccatttcagaggaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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