KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111799961
Entry
111799961         CDS       T05351                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111799961
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpep03041]
    111799961
   03009 Ribosome biogenesis [BR:cpep03009]
    111799961
Spliceosome [BR:cpep03041]
 Complex A
  U1 snRNP components
   U1 related factors
    111799961
 Complex B
    111799961
Ribosome biogenesis [BR:cpep03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    111799961
SSDB
Motif
Pfam: DEAD Helicase_C ResIII WW ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 111799961
NCBI-ProteinID: XP_023539269
Position
LG08:881865..888805
AA seq 1148 aa
METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLP
LAPHPSASTSKPTSIPEGHSMPSNGTLTPHVQQSHHVPQQEGQSNSQLSQQPGHLMSQQH
SSVAGQAIVNHHPSMQMAPDGRQHSVQPNQVLQQQGMFPMSSQHIGQQQVMHQGQKMAHA
NQQISQHPNQQPLQNPGQQIPQPSIQHLGQPNMQNQTPLVGQPQGPQYGQQQPQYIGYQQ
SVHPSVQQNPQQQVQQSPLGQPFGNHLEQKSAFQKREEDNIESGNQIGFSTSQFQQSGGT
SSIHSVHPGTNSSQMQQYGLPSDQARQFGGSPGNMQQPHPVVQLQHSGTELTHRQHHSRF
QDPMGPAAMQEKQAGSENLPGRAGNEYFFGRNEGPGIGPHQPRLAAIPMARSQQDTRMSG
VPFPSVAPGHPSGTSFAAGQSHNMYNHGSGGPSLSNNALMGPPHIGASDVTNMSPVEVYR
QQHEVTATGDNVPAPFMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAI
AKTGSGKTLGYLIPAFVLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRASRICC
TCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQVSLLVLDEADRMLDMGF
EPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELAANKAITQYV
EVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNLGRGFGAAAIHGDKSQGER
DWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRIGRTGRAGATGM
AYTFFCEQDWKYAADLIKVLEGADQLVPPELRDMAMRGGPSFGKDRGGLGRFDAAMGGSR
WDSGGRGGMRDGGFGGRGGARDGGFGGRGGMRDGGFGGRGGMRDGLAGGRGGRGDFFSGR
GRGGRAFGGPPGGHVGWGRGDRGGPQDRYNSVDGRGRGRGQGRFDNRRDFSNRSRGRSYS
RSPERVRTWGYSRSRSRSGSHSSRSWSRSRSRSRSRSRSRSWSRRNSRSRSRSHDNHERS
REKNFDRKDDVPTESVTATSPATRKNAFEIREDGRQLPPADSNNIEPGNPENGADTNDQI
VNTAAQVI
NT seq 3447 nt   +upstreamnt  +downstreamnt
atggaaactggggagtctgctcccccttcccttggtcctcgctatgcaccggacgaccct
actcttcccaaaccttggaagggattgattgatgggagcactggactgttgtactactgg
aaccctgaaaccaacgttactcagtatgaaaaaccggtctctttgccaccaccattacca
ctcgctcctcatcctagtgcctctacttccaagcctacttcaatcccggagggtcattca
atgccatcaaatggcacattaacccctcatgtacagcaaagtcatcatgtccctcaacag
gaaggccaatcaaacagccagctttctcaacaacctggacatctgatgtcacaacagcac
agttctgttgcaggtcaggcaattgttaatcaccatcctagcatgcaaatggcaccagat
gggcgacaacatagcgtgcaaccgaaccaggttttgcagcaacaggggatgtttccgatg
tcgtcgcagcatattggccagcagcaggtcatgcatcaaggtcagaaaatggcacatgcc
aaccaacaaatatctcagcatcctaaccagcaacccctgcagaatccaggacaacaaata
ccacagccctcaatccagcatttaggacagccaaacatgcaaaatcaaaccccattagtt
ggccagcctcaaggtccgcaatatggtcagcagcagcctcagtatattggttaccagcaa
agcgtacatccaagtgtgcagcaaaatccccagcagcaagttcaacagagccctttagga
caaccatttggtaatcaccttgagcagaagtcagcttttcagaagagagaggaggacaat
atcgagtcaggaaaccaaattggattttctacttcccagtttcaacaaagtggtggtacg
tcatctattcatagtgttcatcctggaaccaattcttctcaaatgcaacaatacggttta
ccttccgatcaagcacgacaatttggtggttctccaggaaacatgcaacagccgcatcct
gtggttcaattgcagcattcaggtactgaattgactcatcgccaacatcattctagattc
caagatccaatgggcccagctgcgatgcaggagaagcaagctggttctgaaaatttgcca
ggcagagctggaaatgaatatttctttggcaggaatgaggggcctggaattggtccacat
caaccaaggcttgcagcaataccaatggcaaggagccagcaggatacaaggatgagtggt
gtcccatttccaagtgtggcacccggtcatcctagtggaacaagttttgcagccgggcaa
tcacataatatgtacaaccatgggtctggtggtccatcattgtcaaacaatgctttgatg
ggccctccccatattggagcttcagatgttactaatatgtcacctgttgaagtttatcgt
caacagcatgaagtaactgccacgggtgataatgttccagctccattcatgacatttgag
gctactggcttccctccggagatactgagagagatatattctgctggtttctcatctccc
acgccaattcaagcacaaacatggccgattgccctgcaaggtagagacatagtcgcaatt
gctaaaacagggtctggcaaaactttgggctatttgattcctgctttcgttcttctaagg
cagtgccgaaataaccctcaaaatggaccaacggtgttggttttggctcctactagggag
cttgctactcaaatacaagatgaggcaattaaatttgggagggcttccaggatttgttgt
acgtgcttgtatggtggtgctccaaaaggtcctcagcttaaagagttagatcgtggggct
gatattgttgtggcaactcctggccgacttaatgatatactagaaatgaaaatgatcaat
tttaggcaagtttcacttcttgtgcttgatgaagctgatcggatgcttgacatgggattt
gaaccccaaattagaaagattgtgaatgaaataccaccacgcagacaaactcttatgtat
acagcgacctggcccaaggaagtaagaaaaatagcaaatgatcttcttgtcaattctgtc
caggtgaatattggaagtgttgatgaacttgccgctaacaaggctatcacacagtatgtt
gaagtcgttccacagatggaaaaacagagacggttggagcagatcctcaggtcccaggaa
cgggggtctaaggttataattttttgttccactaagagattgtgtgatcagcttgcacgg
aatcttgggcgtgggtttggggctgctgcaattcatggagacaaatcacaaggagagcgt
gattgggtattgaaccagtttcgtagcggaaagtccccgatactagttgccacagatgtt
gctgcccgcgggcttgacatcaaagatataagagtggtgatcaactttgattttccaact
ggaattgaggactatgtccaccgaattggaagaactgggagggctggagcaacgggaatg
gcatataccttcttttgtgaacaggattggaaatatgctgctgatttgattaaagtactg
gagggtgcggatcagcttgtgcctcctgagttgcgagatatggctatgcgtggggggccg
agttttggcaaggataggggcggtttgggtcgtttcgatgcagctatgggtggcagccgc
tgggattctggaggccgaggtggcatgagagatggtgggtttggtggtcgtggtggtgca
agagatggtgggtttggtggccgcggtggaatgagagatggcggatttggtggccgtggt
ggaatgagagatggtcttgctggtggacgaggtgggagaggtgatttcttttctggacga
ggtagaggaggacgggcctttggtggccctcctggaggtcatgttggttggggcaggggt
gatcgtggtggcccacaggataggtacaatagtgtggatggacgtgggcgtggacgtgga
cagggtcgatttgataacagaagagatttctccaataggagtagaggcagaagttatagt
cgtagccctgaaagagttcgaacatggggctacagccgaagtcgcagtcgcagcggtagt
catagtagtagaagttggagtcggagtagaagtcgtagcagaagtagaagcaggagcagg
agttggtcacgtcgcaatagccgaagccgtagccgtagccatgataatcacgagcgatca
cgtgagaagaacttcgatagaaaagacgatgtacctacagaatcagtaactgctacttct
ccggccacacgaaagaatgctttcgaaataagagaagatgggaggcagcttcctccagca
gacagtaacaacatcgaaccggggaacccagaaaatggtgcagatacgaacgatcaaatt
gtaaacaccgcagctcaagtaatatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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