KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111800075
Entry
111800075         CDS       T05351                                 
Name
(RefSeq) uncharacterized protein LOC111800075
  KO
K10756  replication factor C subunit 3/5
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030  DNA replication
cpep03410  Base excision repair
cpep03420  Nucleotide excision repair
cpep03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111800075
   03410 Base excision repair
    111800075
   03420 Nucleotide excision repair
    111800075
   03430 Mismatch repair
    111800075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpep03032]
    111800075
   03036 Chromosome and associated proteins [BR:cpep03036]
    111800075
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111800075
DNA replication proteins [BR:cpep03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111800075
  DNA Replication Termination Factors
   ELG1-RFC complex
    111800075
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111800075
DNA repair and recombination proteins [BR:cpep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111800075
  Check point factors
   HRAD17(Rad24)-RFC complex
    111800075
SSDB
Motif
Pfam: RuvB_N Rad17 AAA_22 nSTAND3 DNA_pol3_delta2 RsgA_GTPase AAA AAA_5
Other DBs
NCBI-GeneID: 111800075
NCBI-ProteinID: XP_023539425
Position
LG08:2937663..2941884
AA seq 450 aa
MAATQQQQQPNSSSSSSSLRRSLSDSNTRRRQRRRGSISTASFSSKSSWSSKLAKLLARL
NLFSRNSDLTEETLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTTTHVTTT
GPHHYASSTTTAQTQTSLSYAVVSKLKEWAPCLIGKPNTKPPAHNQHETPMTTTVVGKTT
SLVASSSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYTWGDKYR
PKVLEDFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKE
VDRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHARCR
GILLCEADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLSPPSKQE
MKTKIGGEGMNEKGFLVDVTVLHRCGLVLL
NT seq 1353 nt   +upstreamnt  +downstreamnt
atggctgccacacaacaacaacaacaacccaactcctcctcctcctcctcctctctccgc
cgttccctgtcagactccaacacgcgccgccgccaacgccgccgtggcagcatctccaca
gcctccttctcctcaaaatcctcctggtcctcaaagctagccaaactcctagcccgtctc
aacctcttctcccggaactccgacttgacggaagaaaccctccaagcccataacgaacga
atcgacgacctcgataaaaccccccttaaatccagcccttattaccgcggcctcactgac
tcctccctcgccatcaattaccaccatggcccactcaccaccacccacgtcaccaccact
ggtccccaccactacgccagctcaacaaccacggcccaaactcaaacctctctctcatac
gccgtcgtttcaaaactcaaggagtgggccccatgccttataggaaaacccaatacgaag
ccgccagctcataatcaacacgaaactccaatgacgacaacagttgtgggtaaaacgacg
tcgttggttgcttcgtcgtctccggagaagattgagaggtgggcgacggagaaggaagag
aagctgttgagggagagattagtaatgtacgggcggagagagggagggagtggagtgggg
gtagacggcggaggagaggcggcggagaaggagaggtacacgtggggggataaatacagg
ccaaaagtgctggaggattttatatgcaatcggaaaacggcgtgtgagttgaagaaagtg
gtggaggagaagggatgtgggcattatatattcgaaggaccgccgggagttgggaaaagg
acgatgattcaagctatgctcagacaggctttcggcgaacaagcaatggaggtcaaggaa
gttgatagagtttttgccttgaagagtgaaatggtggggagcattgaagtaaaggtgaag
gaatcatcccactgtgtggaagtcaatctctcacaaaccaaaggctttgagaaacaagtc
attgaccagctcatcaaagaaactcaatcccctttgccatgtaatcatgccagatgtcga
gggatattgttatgtgaagcagatcagctatcaaatgaaaccctaatgtacgtaaaatgg
gcaattgagaggaacaaagggtgcagcaaaatcttcttctgttgctctgatgtctctaag
cttcttcttcttagctctttctgcactcacgttcatctctccccaccttcaaagcaagag
atgaaaactaaaataggaggtgagggtatgaatgagaaaggcttcctcgtcgacgtcact
gtcctacatagatgtggtctagtgttgttatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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