KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111803135
Entry
111803135         CDS       T05351                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111803135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111803135
Enzymes [BR:cpep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111803135
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     111803135
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N nSTAND3 AAA_22 AAA_19 ATPase T2SSE AAA_16 PhoH ABC_tran Myosin_head
Other DBs
NCBI-GeneID: 111803135
NCBI-ProteinID: XP_023543190
Position
LG01:7837607..7849104
AA seq 1144 aa
MHNFKRLPNVLLVLSKNINCDLSNKYGLAVRPLKLLLQSHSYSVSRVWRGSYHYAAEQFS
DDEYECDVENNTASSSVANIDEWKWKLSLLSRNEKDQEIISRDNRDKRDFEQISNLAKKM
GLYCSMYGKVVVASKVPLPNYRPDLDDKRPQREVAIPLSLQRRVEGLLQEHCDRIRLSSA
KANEISNDAKSIDEVKDVNTDEYGNSYLDESVMEKVLQRRSLRMRNMQRAWQESPEGRKI
LDFRRSLPAFKEKERLLQAIAQNQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSII
CTQPRRISAMAVSERVSIERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDR
NLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYFGGAPT
IHIPGFTFPVRAYFLEDVLEVTGYKLTSFNQIDDYGQEKTWKTQKQLVPRKRKNQITTLV
EDALDKSTLGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGAVLVFLTGWEDIS
SLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKAPQNVRKVVLATNMAEASITIN
DVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCYHLYPKCVFE
AFSEYQLPELLRTPLNSLCLQIKSLQVPSVGEFLSSALQPPEPLAVQNAIGFLKMIGAFD
EKENLSNLGKFLSMLPVDPKLGKMLVMGAIFHCFDPILTIVSGLSVRDPFLLPQDKKDLA
GTAKARFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIDSLRRQFSF
ILKDAGIVDLDGSTSNKLSHNQSLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLLY
ANSVNARYDTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVKCGVQAGHLKMLN
GYIEFFMDSSLAECYLQLKEELDKLIENKLQNPGLDILKEGKYLVLSVQELVSGDQCEGR
FVFGRESRKQVSTDDKFTRDGSNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRALVEFKG
MQFVGKPKKNKQLAERDAAIEALAWLTHTSDNNTNSDDDSPIDVTDNMLKLLGKRRRSKG
RPGY
NT seq 3435 nt   +upstreamnt  +downstreamnt
atgcataatttcaagcgacttccaaatgttctcttagtattatcgaagaacatcaactgc
gacctgtctaacaagtacggcctcgctgtgaggccacttaaactgcttctacagtctcat
tcgtattctgtttcccgagtctggcgaggttcgtatcattatgctgcggagcaattctcg
gacgatgagtacgagtgcgacgttgagaacaatacggcctcatcttctgtggccaacatc
gatgagtggaaatggaaacttagcttgctatctcgaaatgagaaggatcaagagatcatc
tcaagagataacagagacaagagagactttgagcagatctcaaaccttgccaaaaagatg
gggctctactgttcaatgtatggaaaagtggttgttgcgagtaaagttccccttcctaac
taccgaccagatttggatgataaacgaccacaaagagaggttgctattcctttaagtttg
caaaggagggttgaaggtttactacaggaacattgtgatcgcattcggttaagttctgca
aaggctaatgagatttcaaatgatgccaagtctatcgacgaggttaaagatgttaatacg
gatgaatatggaaattcttatcttgatgagtctgtgatggaaaaggtacttcagcggagg
agtttacggatgcgaaatatgcaaagagcatggcaggaatcacctgaagggaggaagata
ctggatttcaggagatctctgccagcattcaaggagaaggaaaggctactccaggcaata
gcacaaaatcaggtagtagttatatctggagaaactggatgcggtaagactacacaactt
cctcagtacctactagaatcagaaatcgaaactggtcgaggagctttctgtagcataata
tgcactcagccccgaagaatctctgctatggctgtttctgaaagagtatccatagagcga
ggagaaccccttggtgaaacagttggctataaagttcgattagaaggtatgaaagggaaa
aacacccatctcttgttttgcaccagtggtatattacttcggaggcttctaagtgaccgt
aatctaaatgggattactcatgtctttgtggatgaaattcacgagcgaggcatgaatgaa
gattttctgttgattgtcttgaaggatctacttccacgccgccgggatttaagattaatc
ttgatgagtgccactttaaatgctgaacttttttccagttattttggaggagcaccaact
attcatatcccaggttttacatttccagtgagggcgtactttttggaagatgtgttagaa
gtaactggctataagttgacatctttcaaccaaattgatgattatggccaagagaaaacg
tggaaaacacagaaacaattagttccgcgaaaaaggaaaaaccaaatcactactcttgtt
gaggatgctcttgataaatcaaccctgggaaattacagttcaaacacacgagattctctc
tcatcctggatgcctgattgcataggttttaatcttattgaggctgttttgtgccacata
tgtcgtaaggagagacctggtgcagttttggtattccttactggatgggaggatattagc
agtttgagggatcaactgaaagctcatccacttttaggggatccaaacagggttttgctt
ttgacatgccatggttcaatggcaacatctgaacagagactcatatttgagaaagcccct
cagaacgtccgcaaagtagttcttgccactaatatggcagaggcaagcatcacaataaat
gatgttgtttttgttattgactgtggaaaggcaaaagaaaccacgtatgatgcgttaaac
aatacaccttgtctattaccttcatggatatcacaggcatctgctcggcaaagaagggga
cgggctggccgtgttcaacctggaaaatgttatcatctttacccaaaatgtgtttttgaa
gcattttctgagtatcaacttcctgaacttttgagaactccactgaattccctctgcctt
caaataaaaagtctgcaggttccgagtgtaggagaattcttgtcatctgctctacagcca
ccagagcccttggctgtacaaaatgccattggttttctaaagatgattggggcatttgat
gagaaggaaaacttgtcaaatctcggaaaatttttgtcaatgcttcccgttgaccctaag
ctaggaaaaatgctggttatgggtgctatcttccattgctttgatcctatccttactata
gtttccggccttagtgtcagagatccttttcttctgcctcaggacaaaaaagatttagct
gggacagccaaggctagattttctgcaaaggactacagtgatcatatggcacttgttcgt
gcttacgagggatggaaagatgcagaaagagaagggtcatcctatgagtactgctggagg
aacttcctctctgcccaaacacttcaggcaattgattcccttagaagacagtttagcttc
attttaaaggatgcaggaatagttgatttagatggtagcacgagcaataagttaagccat
aaccagtctcttgttcgtgcaatcatttgttctggtctctttcctggcgtagcatctgtt
gtgcacagagagacttccatgtctttcaaaaccatggatgatggccaggtcttactatat
gcgaattctgtaaatgcgcgttatgatacaattcccttcccatggctggtattcggcgag
aaagtgaaggtcaacacagttttcttacgagattccactggcatatctgattcgatgctg
attctttttggtggagcagtgaaatgtggtgtacaggctggtcatttgaaaatgttgaat
ggctacattgaattctttatggattctagtttggcggaatgctatttgcaactcaaagaa
gaacttgataagcttattgaaaacaaacttcagaatccggggcttgacattctcaaggaa
ggcaagtatcttgttctttctgttcaagagttggtgtccggtgaccaatgcgaggggaga
tttgtcttcggtcgggaaagtaggaagcaggtgtctaccgacgacaaattcacaagggat
ggctccaacccaaagagcttgctacaaaccttgctaatgagggcaggacatacccctcca
aaatacaaaaccaaacacctcaaaacaaatgaattcagggcgctggttgagtttaaggga
atgcaatttgtgggtaagcctaagaaaaacaagcagcttgcagagagggatgctgccata
gaggctctagcttggttgacacacacctcggacaacaacactaattcagacgacgactct
cctattgatgtaactgataacatgctaaaactccttggcaaacgaaggcggtctaaaggt
cgccctggttattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (26)   

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