KEGG   Chrysemys picta (western painted turtle): 101940144
Entry
101940144         CDS       T04662                                 
Symbol
THOC2
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
cpic  Chrysemys picta (western painted turtle)
Pathway
cpic03013  Nucleocytoplasmic transport
cpic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101940144 (THOC2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    101940144 (THOC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpic03019]
    101940144 (THOC2)
   03041 Spliceosome [BR:cpic03041]
    101940144 (THOC2)
Messenger RNA biogenesis [BR:cpic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     101940144 (THOC2)
Spliceosome [BR:cpic03041]
 Complex C
  Other components
   EJC/TREX
    101940144 (THOC2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101940144 (THOC2)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 101940144
NCBI-ProteinID: XP_023965461
Position
8:44154455..44270761
AA seq 1596 aa
MAAAGALPAEWIKNWEKSGKSEFLQLCRTLSENKSHENVTFRDIQQALYELANHVVKGNL
KHDQASNVLSDVIEFRDDMSSILADVFCILDIETSCLEEKSKRDHFTQLVLACLYLVSDT
VLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQ
DLSGNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDEFFVPLIESYMYMCEP
QTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPVDNAILEEHKR
EIVEAKQIVRKLTMVVLSSEKTEEKEKEKDKEEEKTEKPPDNQKLGLLEALLKVGDWQHA
QSIMDQMPPFYATSHKPIAIALCQLVHVTIEPLYRRVGVPKGAKGSPISNLQNKRAPKQA
ESFEDLRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEFQSDGNKQEDKEKMEILFS
CLLNITDQVLLPSLTLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVKV
KAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSL
KYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLL
QYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRN
TKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFG
GFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNK
QQHKVHKYITSCEVVMAPVHDAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPHNSYDR
EVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEKD
NWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVF
SDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRNIYEKECGNYPGFLTILRATGFDG
GNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLG
QALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPYMVPENEFHHKDPPARNAVAATV
QNGPGGAGLPASLTINAAKLEESTAEETDKLKEKTQGAVKVINKAANATPKVTTSNGNSA
SNSKIIKEKDDKEKSGKEKDKXKKEKTPAAIPEAKALGKDGKDKPKEERANKDDKSRETK
EKTPKSDKEKEKAKKEEKTPKDEKSKTVVTNAESKFAAEKEREKEPSRERDVAKDMKSKE
NIKGGEKLSVAGSLKSPVPRSETSESEREQKRRKVDTHSSPSHSSTVKDNLCELKDSSAK
HYINHTTPALSKSKEREVDKKDLDKSRERSREREKKDEKDRKDRKRDHSNSDREVPQDST
KRRKEENGTTGSSKHSKSESPSDSPRSNEKEKEKNKSKSSGKEKGDSVKTEKMEKSSSGS
KKESRHDKEKXRKKEKRDSAGGKEEKKHHKSSDKHR
NT seq 4791 nt   +upstreamnt  +downstreamnt
atggcggcggcgggggcgctccctgccgagtggataaagaactgggagaaatcgggcaag
agcgagtttttgcaattatgccgcacgctcagtgaaaataaaagccatgaaaatgtgact
ttcagagatatccagcaggctctgtatgagcttgcaaatcacgttgtcaagggaaaccta
aagcatgatcaagcttctaatgttctcagtgatgttatagaatttcgggatgacatgtcc
tccatccttgctgatgtattctgcatattggatattgaaacaagttgtttagaagaaaaa
agcaagagggatcattttacacaactggtgttagcctgtttgtaccttgtttcagacacc
gtcctaaaggagcgtctggatccggaaacactggaatcattagggctcatcaagcagtct
cagcagtttaatcagaaatctgttaaaatcaagacaaaacttttttataaacaacagaaa
tttaacttattaagagaagagaatgaaggttatgcaaagctgattgctgaactggggcaa
gatttatctggcaatatcactagtgatttaatcctagaaaatatcaaatccttaatagga
tgttttaacttggatcccaacagagttttggatattatcttagaagtctatgaatgtagg
ccggaatacgatgaattctttgtacctttgatagaatcatacatgtatatgtgtgaacct
caaactctgtgtcatatccttgggttcaaattcaaattctatcaggaaccaaatggtgaa
acaccttcctctttatacagagttgctgcagtacttttgcaacataatcttatagatttg
gaagatctttatgtacatcttcttccagtagataatgccattcttgaagaacacaagcga
gagattgtagaggcaaaacaaattgttaggaaacttacaatggtggttttgtcctctgaa
aagactgaagagaaagagaaggaaaaggacaaggaagaggaaaaaactgaaaagccacct
gacaaccagaaacttggtttgttggaagctttgttaaaagttggtgattggcagcatgca
caaagtattatggatcaaatgcctccattttatgccacttcacacaagcctattgccatt
gccctttgccagcttgtacatgtgaccattgagcctttgtaccgcagagttggagtacct
aaaggggctaaagggtcaccaatttccaatttgcaaaataagagagccccaaaacaagca
gaaagttttgaagatttgaggaaggaagtgttcaacatgctttgttatcttggtcctcat
ctctcccatgatcccattttatttgcaaaagtggttcgcttaggaaaagcatttatgaaa
gagtttcaatctgatggaaataaacaagaggataaagagaaaatggagattttgtttagc
tgtttgttaaatattaccgaccaagttttgctcccatctcttactttaatggactgcaat
gcgtgcatgtccgaggaactctggggaatgttcaaaacttttccataccagtatcgctat
cgtctctatggacaatggaagaatgaaacatacaacagtcacccacttctagtgaaagtt
aaagctcaaactatcgacagagccaaatatatcatgaagcgtctaactaaggaaaatgtg
aagccttctggaagacaaattgggaagctaagccatagcaatccaacaattttatttgat
tatattttgtcacaaatacaaaagtatgataatttaattacaccagttgttgattcattg
aaatacctcacttcactgaactacgacgtcttggcatactgcatcattgaagctctggca
aatcccgagaaggagagaatgaaacatgatgacactacaatttctagctggctgcagagt
ctagctagcttttgtggtgcagttttccgaaaatatccgattgaacttgctggtctactg
cagtatgtagcaaaccaactaaaggctggaaaaagctttgacttgctcattttaaaagag
gtggtacaaaaaatggctggaatagaaataacagaagagatgacaatggagcagctagaa
gccatgactggtggagaacagctaaaagctgagggtggatattttggccagatcagaaac
actaaaaaatcttctcagagattaaaagatgcattgcttgaccatgatctggcccttcca
ctgtgcctgctcatggctcagcagcgaaatggtgtgatctttcaggagggaggggagaaa
catttgaagctggtggggaagctgtacgatcagtgccatgatactctggtacagtttggt
ggatttttagcatccaatctaagcacagaggattacattaagcgagtgccttctattgac
gttctctgtaatgagtttcacacaccccatgatgctgcatttttcctctccaggcctatg
tatgcacatcatatttcatcaaaatatgatgaacttaaaaaggctgagaagggaaacaaa
cagcagcacaaagttcacaagtacatcacgtcatgcgaggtagtgatggctcctgttcat
gatgctgtgatctccttgcaccttcctaaagtttgggatgacatcagtcctcagttctat
gctacattttggtctttgacaatgtatgaccttgctgttccacataatagctatgaccga
gaagtcaataaacttaaagtccagatgaaagctatagatgacaatcaggaaatgcctcca
aataaaaagaaaaaagaaaaagaacgttgtacggcccttcaggacaagcttcttgaagag
gagaaaaagcagttggagcatgtgcagagggttctacagagactgaaactggaaaaggat
aactggcttctggcaaaatcaaccaaaaatgagactatcacaaaatttctacagttgtgt
atatttcctcgctgcattttttctgcaatcgatgctgtttactgtgctcactttgtagaa
ctggtgcatcaacagaaaacacccaatttttccacacttctctgttatgatagagttttc
tcagatataatctatacagtagcaagttgcactgaaaatgaagctagtagatacggcagg
tttctgtgctgtatgctagagactgttactaggtggcacagtgatagaaacatatatgaa
aaggaatgtggcaactatccaggcttccttaccatattacgggcaactggatttgatggt
ggaaacaaagctgatcagttagattatgagaactttcgacatgtggtacacaaatggcac
tataaattaactaaggcttctgtacactgccttgaaacaggcgaatatacacatatcaga
aatatcctgattgtgctgaccaaaatccttccctggtatccaaaagttctgaacctgggt
caggccttggaaagaagagtacataagatctgtcaggaagagaaagagaagagacctgat
ctatatgcgttagctatgggctattctgggcaattgaaaagtagaaagccttacatggta
ccggaaaatgaattccaccacaaagacccacctgccaggaatgctgtagctgcaacagtg
caaaatggaccaggtggtgctgggctgcctgcatcactcacaataaatgcagctaaactg
gaagaaagcactgctgaggagactgacaaactaaaggagaaaactcagggtgctgtgaaa
gttattaataaagctgccaatgcaacaccaaaagtgacgacaagcaatggaaacagtgct
tctaacagcaaaattattaaagaaaaagatgataaagaaaaaagtgggaaggaaaaagat
aaangaaaaaaagaaaagactccggctgccattccagaggccaaggcacttggaaaggat
ggaaaagataaaccaaaggaagaacgggcaaacaaagatgataaatcaagagagaccaag
gaaaaaacaccaaaatctgacaaagagaaggaaaaagccaagaaagaagaaaaaacgcca
aaagatgaaaaatccaaaacagttgttaccaacgctgagtcaaagtttgctgcagaaaag
gagagagaaaaggagccatccagagaaagagatgtagcgaaggatatgaaatccaaggaa
aatattaaaggaggagaaaaattgtcagtagctgggtccttgaagtcacctgttccccga
tcagaaacatcagagtctgaaagggaacaaaaacgtcgcaaagttgatacccattcttct
ccatcacattcctcaacagtaaaggacaacctctgcgaactcaaggactcttcagcaaag
cactacattaaccacactactcctgcactgtccaagagtaaggagagagaagtggacaag
aaagatttggacaagtccagggaaagatccagagagagagagaagaaagatgaaaaggat
aggaaagatcgaaaaagggatcattcaaatagtgaccgggaggtaccacaggactcaacc
aaaaggcgtaaagaggaaaatggaacaactggttcttcaaaacatagtaaaagtgaaagt
ccatctgattctcctcgttcaaatgagaaggaaaaggaaaagaacaaatcaaaatcttca
ggcaaagaaaaaggtgattcagtcaaaactgaaaagatggagaaaagttcctctggtagc
aaaaaggagtctagacatgataaagaaaaanacagaaaaaaggaaaaacgggacagtgct
ggagggaaagaagaaaagaaacatcataaatcttcagacaagcacagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (37)   

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