KEGG   Chrysemys picta (western painted turtle): 101950630
Entry
101950630         CDS       T04662                                 
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X2
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
cpic  Chrysemys picta (western painted turtle)
Pathway
cpic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101950630 (PATL1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpic03019]
    101950630 (PATL1)
Messenger RNA biogenesis [BR:cpic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101950630 (PATL1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     101950630 (PATL1)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 101950630
NCBI-ProteinID: XP_005280598
Position
Unknown
AA seq 804 aa
MYVFRDGEACVSRGGGSEPERGPRGASLAVGVSAPRTMFRYQSLEDCPLDEDAFQTLGEE
DEDIDQFNDDTFGAGAIDDDWQEAHERLAELEDKPATARELEDGAVSDEMDLLGHHEENL
AERLSKLVIENELEDPAIMQAVQTQPPMQPGGLNSSIWDGSAVLRRIRGPLLTQEMPSVS
VLEYAMPQRPLQGQEDERDLSERALPRRSSSPVIGSPPVRAVPIGTPPKQAAVPNFNQQI
LCPKPVHIRAPMQQRYPSPYGERMSPNQLCNVPNSSLLGHPFPPSVTPVFTHLQRAQLLG
GAQAGRMSPSQFARVSGLVGSPLTSMNPKLLQGRVGQMMSPASGFRAFFGAPPPSAPPPS
QQQQHPPCPGSHLQNLRPHPQMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSAGDRA
GHRSSQQEQLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFQKLEKVSAA
EEMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSE
DDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSLEGERPALMEERKQKICDMY
DNLRGKTPGQERPSDDHFVQIMCIRKGKRMVARILPFLSMEQAADILMATARNLPFLIKK
DAQDEVLLCLLRPFSLVLYHLPSGTVTSLLQQLANLPQSVTAPAPANLHLAAVLQNKFGL
SLLYLVLSRGEELQNSNAGTELMQDNQWTELMSMTTRELLRIPEAALAKPVSTPSNLLSL
FSRYVDQQKLNVLETKLQLVQGIR
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgtacgtgttccgtgacggcgaagcgtgcgtatcgaggggcgggggctcggagccggag
cggggtccgcgcggggcctccctggcggtgggagtctccgcgccgcgcaccatgttccgc
taccagtccctggaggactgtcctctggatgaagatgcctttcagaccctgggtgaggag
gatgaagatatcgaccagttcaatgatgacacgtttggagccggtgctattgatgatgac
tggcaggaggcacatgaacggcttgcagaactggaagacaagcctgcgacagctagagag
ctggaagatggggcggtcagtgatgagatggacctgctggggcaccatgaggagaacctg
gccgagaggctgagcaagctggtcattgagaacgagttggaagatccagccatcatgcag
gctgtgcaaacccagcctccaatgcagccaggaggcctcaactccagcatctgggatgga
tccgcagttctgaggcgcatccgaggaccacttctcactcaggagatgccctcggtgtct
gtgctggaatatgctatgcctcagagacccctgcagggccaggaggatgagcgggacctc
tcggagcgggcactgcccaggcgctcgtcctccccagtcattgggagcccccctgtcagg
gctgtccccatcggcaccccaccaaagcaggctgccgtgcccaacttcaaccagcagatc
ctgtgtccaaagcctgttcacatccgggccccgatgcaacagcgttatccttccccctac
ggcgagaggatgtccccaaaccagctctgcaatgtcccgaattcttccctcctgggccac
ccgttccctcccagcgtcactcccgttttcacccaccttcagagagcgcagcttctagga
ggagcacaggctggacgaatgtctcctagccagtttgctcgtgtctctggactcgttggc
agccccctcacatccatgaaccccaagttgcttcaaggcagagttgggcagatgatgtct
ccagccagtgggttccgtgccttttttggggcgccaccaccttccgcgccacccccatcc
cagcagcagcagcaccccccatgtcctgggtcccacttgcagaacctaaggcctcacccg
cagatgttcagaccagatacaactcaccttcacccgcagcatcggcggctcttacatcag
agacagcagcagaacaggaaccagcaccggagtttgaatggctcagcaggggaccgagct
ggccaccggagcagccagcaggagcagctgcggaaggacccctatgccaatctcatgttg
cagcgggaaaaggactgggtatcaaagatccagatgatgcagttgcaaagcactgaccct
tacctggatgacttctactatcagaattacttccagaagctggagaaagtgtcagcggca
gaggagatgcacggcgatggccccaagaaagaacgtactaaactcatcacaccccaggtg
gccaagttagagcatgcctacaagccagtgcagtttgagggctcgctggggaagctcaca
gtctccagtgtaaataacccccggaaaatgattgatgcggtggtgacctcccgcagcgag
gacgatgagacgaaggagaagcaggttcgagacaagagacgtcagaccctcgtcaccatt
gagaagacgtacagtctcctcctggatgtggaggactacgagaggcgctacctcctgagc
ctggagggggagcggccggccctgatggaggagagaaagcagaagatctgtgacatgtat
gacaatctgagggggaaaacacccggccaagagaggccaagtgatgaccactttgtgcaa
atcatgtgtatccggaaagggaagcgtatggttgcccggatcctgccttttctgtccatg
gagcaagcggctgacatactcatggcaacagccagaaatctgcccttcctgatcaagaag
gatgctcaggatgaggtgctgctgtgcctgttgaggcccttctctctcgttctctatcat
cttccgtcggggacagtcaccagccttctgcagcagctagcgaacctacctcagagcgtc
acggcgccagcacctgccaacctgcacctcgcagctgtgctccagaacaagtttggcctg
tccctgctgtacttggtcctgagtcgtggggaggaattgcagaattccaatgctggtacg
gagctaatgcaggacaaccagtggacagagctgatgtccatgacaacccgagagcttctg
cggatccccgaagcagcgctggcaaagccagtatccaccccttctaatctgctgtccctt
ttttctcgctatgttgatcagcagaagctgaacgtgctggagacaaagttgcagttagtg
caggggatacggtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (1)   
   Pfam (1)   
All databases (36)   

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