KEGG T00379: CPR

Clostridium perfringens SM101: CPR_1674

Entry

CPR_1674          CDS       T00379

Symbol

topA

Name

(GenBank) DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

cpr Clostridium perfringens SM101

Brite

KEGG Orthology (KO) [BR:cpr00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpr03032]
    CPR_1674 (topA)
   03400 DNA repair and recombination proteins [BR:cpr03400]
    CPR_1674 (topA)
Enzymes [BR:cpr01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CPR_1674 (topA)
DNA replication proteins [BR:cpr03032]
Prokaryotic type
  DNA Topoisomerases
   CPR_1674 (topA)
DNA repair and recombination proteins [BR:cpr03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CPR_1674 (topA)

SSDB

Motif

Pfam:

Topoisom_bac zf-C4_Topoisom Toprim Zn_ribbon_recom Toprim_4 Toprim_2

Other DBs

NCBI-ProteinID:

ABG85645

UniProt:

Q0SSB8

Position

complement(1869794..1871896)

AA seq 700 aa
MGQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENDYNPKYITIRGK
GELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDENENCRIEFNEITKDAVKN
SIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLICDREE
EIKKFNPEEYWTVDVKLKKGKKSFPVKLTTKNKKKIEIKNKEQADQIIDELKENEYIVSK
IKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVEVKKFGTVGLITYMR
TDSVRISKEAQEKALNFIDETYGKEYVPEEPRVYKGKKNIQDAHEAIRPTYVEITPEIAK
TNLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGDYTLRASGSTIKFDGFMKVYEY
ISGEEEESVLLPELEENEVLKEESIEGKQHFTQPPARYSEAAFVKLLEEKGIGRPSTYVP
TISTLISRKYVDREKKILIPTELGFIVNDILSNYFKQIVDTDFTAEMEVKLDNVEAGKES
WTHIVDEFFTPLKEDIEKAEKEISKVIIEDKVSYVPCDKCGRLMVIKHGRFGDFLACPGY
PECQNTKPIVEEVDANCPLCGGKILVKRSKKGNRFYGCSNYPECNFVSWYEPTNEKCPEC
SSYMVKRYSKSKGEYLQCSDKECKYEKIIEKNNDENNSEK

NT seq 2103 nt +upstreamnt +downstreamnt
atgggtcaaaaattagtaattgttgagtcaccagctaaagccaagacaatagaaaaatat
ttaggtaaaaattatgtagtcgaagcttcaatgggacatgtaagagatttgccaaaaagc
caattaggcgttgatatagaaaatgactataatcctaaatatataacaataagaggaaaa
ggtgaacttttaagcaaacttagaaagttagctaaaaaaagtgataagatataccttgca
actgaccctgatagagaaggggaagctatatcttggcacttagctaatgtgcttaagata
gatgaaaacgagaattgtagaatagaatttaatgaaataacaaaggatgcagttaaaaat
tcaataaagcatccaagaaaaataaattgtaatttagtagatgctcagcaagcaagaaga
gtgttagacagattggttggatatgaaataagtccactcctatggaggaatgtaaaatgg
ggattgagtgctggaagggttcagtcagcagcattaaaacttatatgtgatagagaagaa
gaaataaagaagttcaatccagaggagtattggactgttgatgttaaacttaaaaaagga
aagaagtcttttcctgttaagttaacaactaaaaataagaaaaagatagaaataaaaaat
aaagaacaagcagatcaaataatagatgaacttaaagaaaatgaatatatagtaagcaag
ataaaaaaaggaactaagaataaaaatcctttagctccatttactacaagtactcttcaa
caagaggcaagtaaaaagcttaactttatgacaaagaaaacaatgtcagtagctcaacaa
ctttatgaaggggttgaagttaagaaatttggaactgtgggtttaataacttatatgaga
actgattctgttagaatctcaaaggaagctcaagaaaaagctcttaactttatagatgaa
acatatggaaaagagtatgttccagaggagccaagagtatataaaggaaagaaaaatata
caagatgcccatgaagctataagacctacatatgttgaaataacaccagagattgctaag
acaaacttaagtaatgatcaatataagttatatgctttaatatggaaaagattcatagca
agccaaatggctacatgtatattaaatactaatagtttagagattaaaaatggtgattat
acattaagagctagtggatctaccataaaatttgatggtttcatgaaagtttatgagtat
atatcaggagaagaggaagaatcagtacttttacctgaattagaagaaaatgaagtttta
aaagaagaatcaattgaaggtaaacaacattttactcaaccacctgctagatattcagag
gctgcttttgttaagcttttagaggaaaaaggtattggaagaccaagtacttacgttcca
acaatatctacattaataagtagaaaatatgtagatagagagaaaaagattcttatacca
acagaattaggatttatagtaaatgatatactttcaaattattttaagcagatagttgat
actgactttactgcagaaatggaagttaagcttgataatgttgaagctggaaaagaaagt
tggactcatatagtagatgaattctttactccattaaaagaagatatagaaaaggcagaa
aaagagatatctaaggttattatagaagataaagtcagttatgtaccttgtgataaatgt
ggaagacttatggttattaagcatggaagatttggagatttcttagcttgccctggatat
ccagagtgtcaaaacacaaaacctatagttgaagaggttgatgcaaactgtccattatgt
ggaggaaagattttagttaagagaagtaaaaagggaaacagattctatggatgtagtaat
tatccagagtgtaatttcgtaagttggtatgagccaacaaatgaaaaatgtccagaatgt
agttcatatatggttaagagatactctaagagtaaaggtgaatatttacagtgtagcgat
aaagaatgtaaatatgaaaaaataattgaaaaaaataatgatgaaaataactcagaaaag
tag

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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