KEGG   Chlamydia psittaci M56: B602_0269
Entry
B602_0269         CDS       T02310                                 
Name
(GenBank) vacB and RNase II 3'-5' exoribonucleases family protein
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cpsm  Chlamydia psittaci M56
Pathway
cpsm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpsm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B602_0269
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpsm03019]
    B602_0269
   03016 Transfer RNA biogenesis [BR:cpsm03016]
    B602_0269
Enzymes [BR:cpsm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     B602_0269
Messenger RNA biogenesis [BR:cpsm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     B602_0269
Transfer RNA biogenesis [BR:cpsm03016]
 Prokaryotic type
  tRNA degradation factors
   B602_0269
SSDB
Motif
Pfam: RNB OB_RNB CSD2
Other DBs
NCBI-ProteinID: AFS24966
Position
complement(253691..255736)
AA seq 681 aa
MKKIRKKRPQSFRRNSKQILISGVLFVHAKKGFGFVTPDHPEEYPFDIFIPARDLKGALD
GDHVVVSLFPNSKEGEKRKGVIHQVVSRGKTVLVGTITSLIDASTAFVCVNALGPEIPVK
AQLVPKRAYKIGDRLLLSTPAWKAKPESKEPLPLEMLEFIGNISNAKSDFPCIKAEYGIE
EEFPEAVIEETNHFSQKHISQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYI
LGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAVS
VFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVENKQPHPISKTLLAMAELSEKFSD
IREKRGCIRLVLPSFTMSLDNLQEPVTLIETRQTLSHKLIEEFMLKANEVVAYHISHQGV
SLPFRIHESPNDESLLSFQEVAKAMGFDIIMTPAQEPDFQYLLQESSAGHPLESILHSQF
VRSMKTASYSTENKGHYGLKLDFYTHFTSPIRRYIDLIVHRLLFHPMSIEETRLEHIVRA
CSTQERIAAKAEFAFENLKKNRFLHKFLKEQPDTIYQGYIITINPEGLSFTVPEFCQEGF
IPSAQLPKEFSLKKKTSPDDLPPKMRPGAPIEVKLSEVNLLNQAITWSLVTKAPNTIKKQ
PTSARKTKDKKPRTRSKRNTE
NT seq 2046 nt   +upstreamnt  +downstreamnt
gtgaagaaaatcagaaaaaaacgaccgcaaagctttagaagaaactcgaaacaaatatta
atttccggcgtcctatttgttcatgcgaaaaaaggtttcgggtttgttacacccgaccac
cccgaagaatatccttttgatatttttattcccgcaagggatctgaaaggagccttagat
ggagatcacgttgtcgtctctcttttccccaattctaaagaaggagaaaaaagaaaagga
gtaattcaccaagtcgtctctagagggaaaactgttcttgtaggaacaataacctcgctc
attgacgcctcaactgcgttcgtctgtgttaatgctttgggcccagaaatccccgtaaaa
gcgcaacttgttcctaaacgtgcttataaaattggcgatcgtttactactaagcactcct
gcatggaaggcaaaacctgaatccaaagaaccacttccgttggaaatgctcgaatttatt
gggaatatctccaacgccaagtccgatttcccctgcataaaagctgaatatgggattgaa
gaagagttcccagaagctgttatcgaagaaactaaccatttctcacaaaaacacattagc
caagcactacgatcacgaaaagatcttcgcgatctcttatgctttactattgactcaata
actgcaaaagacttcgatgatgccgtatccttaacttatgacaataatgataattacatc
cttggcgtccatattgcggatgtctcccactacgtaacacctcactccgctctagatcaa
gaagctagtaaaaggtgtaactctatctactttcccgggaaagtgattcctatgctaccc
cccgccctttcggataatctctgcagcttaaaacctaacgtcgatagactcgccgtttct
gtgttcatgacgtttacaaaatccggtcatttatccgattacgaaatattccgtagtgta
atccgcagtaaatatcgcatgacctatgacgaagtggacgagattgtagaaaataaacaa
ccccaccccatatcaaaaactcttctcgctatggcagaactaagcgaaaaattctctgat
atcagagaaaaacgtgggtgcatacgtcttgttcttccttcattcaccatgtctctagat
aacctgcaagaacctgttactcttatagaaacacgacaaacgctatcgcataaactaata
gaagagtttatgctcaaagctaatgaagtcgttgcttatcatatttcccaccaaggcgtt
tctcttccatttagaattcatgaatctcctaatgatgagagtttgctctctttccaagag
gtcgcaaaagctatgggttttgatattatcatgaccccagctcaagaacctgattttcaa
tatctattacaagagagctctgcaggacatcctctagaatcaattctacattcacaattt
gttcgtagtatgaaaacagcctcatactcaaccgaaaataaaggtcactatggtcttaaa
ttggatttctacacccacttcactagcccaatccgtcgctatatcgatcttattgttcat
aggctccttttccaccccatgtctatagaagaaacacgcctagagcatattgtaagagca
tgctctactcaagagcgtatagccgcaaaagctgaatttgcttttgaaaaccttaaaaaa
aaccgtttcttacataagttcttaaaagaacaaccggacacaatttatcaaggctacatc
atcacaataaatcctgaaggtctctcatttaccgttccggaattttgccaagaaggattt
attccatccgcacaattacctaaagaattctctttgaaaaagaaaacatcccccgacgat
ctacctcctaaaatgcgtccaggagcccccatagaagtaaaactctctgaagtaaatctc
ctaaatcaagcgattacttggtcattggtaacaaaagcaccaaacacaataaaaaaacaa
ccaactagcgcgagaaaaactaaggacaagaaacctagaactagaagcaaaaggaataca
gaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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