KEGG   Corynebacterium pseudotuberculosis CS_10: CPTB_00678
Entry
CPTB_00678        CDS       T03483                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cpsu  Corynebacterium pseudotuberculosis CS_10
Pathway
cpsu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cpsu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CPTB_00678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpsu03021]
    CPTB_00678
   03400 DNA repair and recombination proteins [BR:cpsu03400]
    CPTB_00678
Enzymes [BR:cpsu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CPTB_00678
Transcription machinery [BR:cpsu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CPTB_00678
DNA repair and recombination proteins [BR:cpsu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CPTB_00678
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AIG08734
Position
complement(695553..699563)
AA seq 1336 aa
MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITGVDEEARHSDQTTLEAEMLLEKKDVEADAESEIAERAQKLEED
LAELEAAGAKADARNKVQKAADKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELREIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKTEGEIGGQ
GAYQPATEDGPATGVYSSYAEALMARDRGVLGLQAKIRVRISHLRPPVEVEAEQFPEGWE
QGQTWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGSNKILLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEAAKIERKYWEQGALTERE
RYDRLVELWKEATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTKQGIRVPVAVEVKDAQGNVTGYTGHSLIETSVAGRVASVDIKDSEGNVLVPAGENL
TDQLIEKLIAAGVAEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLEDEGNFYTL
TINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLSEGDHVNVGDRLLRGPADP
HDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGATEFLPG
TLVDLSEAKAANAEAIAAGGHPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI
NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDSY
GEFTGASVPLDEAYDL
NT seq 4011 nt   +upstreamnt  +downstreamnt
gtgatcgacgtcaacttcttcgacgagctccgcatcggcctggctactgccgacgacatt
cgtcgttggtccaaaggcgaggtcaaaaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacggcctcttctgcgagcgaattttcggcccaacccgcgactgggagtgc
gcttgcggtaagtacaagcgtgtccgttacaagggcatcatctgtgagcgctgtggcgtt
gaggtgaccaagtccaaggttcgccgtgaacgcatgggccacatcgaactggctgcgccc
gtcacccacatttggtacttcaagggtgtcccgtctcgtctcggttaccttttggacctg
gctccaaaggatctcgagcgcatcatttacttcgcagccaacatcatcactggtgttgac
gaggaagctcgccacagcgaccagaccactcttgaggcagaaatgcttttggagaagaaa
gacgttgaggctgacgcagagtctgagatcgcagagcgcgctcagaagctggaagaggac
cttgccgagctggaagccgcaggcgctaaggccgatgcccgcaacaaggtgcaaaaggct
gcagataaagagatgcagcacatccgcgagcgggctgagcgcgagatcgatcgtcttgag
gagatctggcagacctttatcaagcttgctcctaagcagatgatcattgatgagaccatc
tatgaagagctcgtggatcgttacgaggattacttcaccggtggtatgggcgcggaggcc
atccaaacccttatccgcaactttgacctcgatgctgaggcagaggaactgcgcgagatc
atcaacaatggcaaaggccagaagaagatgcgtgccctcaagcgactcaaggttgttgct
gcattccagcgctcgggcaatgacccagctggtatggtgctcgactgcatcccggtgatc
ccaccggagctgcgtccgatggttcagctcgatggtggccgttttgctacctccgacctg
aacgatctctaccgtcgcgtgattaaccgcaacaaccgcctcaagcgcatgatcgacctc
ggtgctcccgagatcatcgtgaacaacgagaagcgtatgttgcaggagtccgtcgacgcg
ctctttgataatggtcgccgtggtcgtccggtcaccggtcctggcaaccgtccgctgaag
tccttgagcgatttgcttaagggcaagcagggtcgtttccgtcagaacttgctgggtaag
cgtgtcgactactctggtcgttccgttattatcgtcggtccacagctgaagctgcatgag
tgcggtcttccaaagctcatggctcttgagctcttcaagccgtttgttatgaagcgcctt
gtggaaaacgattacgcgcagaacatcaagtcggctaagcgcatggttgagcgtcagcgc
cctgaggtgtgggacgttctagaagaggcaatttctgagcatcctgtgatgcttaaccgt
gcacctaccctgcaccgcctaggcatccaggccttcgagcctaagctcgttgagggtaaa
gctatccagctgcacccactcgcgtgtgaggccttcaacgctgacttcgacggtgaccag
atggctgtgcacttgccgctatctgctgaagcacaggccgaggcgcgcatcctcatgctt
gcctccaacaacattctctccccggcatccggtaagccacttgccatgccgcgtctggac
atggtgactggtctttattacctcaccatggacaagactgagggtgaaattggtggtcag
ggtgcataccagcctgctactgaggatggtccagcaacgggtgtgtactcctcctacgct
gaggcacttatggctcgcgaccgtggcgttcttggcctgcaggccaagatccgggtacgc
attagccatctgcgtccgccggtagaggttgaggcagagcagttcccagagggttgggag
cagggacaaacctggttggctgataccactcttggccgcatcatgttcaacgagctcttg
ccgtggaactacccgtaccttgagggcgttatggtccgtaagggtggaggatcgaacaag
attctcttgggcgacgtgattaatgatctcgctgcgacctatccaatgattactgttgct
cagacgatggacaagatgaaggacgccggtttctactgggcaacccgaagcggcgtgacc
atcactatgtctgacgtgctcgttcttcctaataaggaagaaattcttgaccgctatgag
gccgaggctgcaaagatcgagcggaagtactgggagcagggtgctctgacagagcgcgag
cgctacgaccgtctggtcgagctttggaaggaggctaccgacgaggtcggtaatgccgtc
gagaagctctatccggatgacaacccgattcctatgatcgtgaagtccggtgctgccggt
aacatgcgtcagatctggacgctggctggcatgaagggcatggttgtgaactcaaagggt
gattacatcacccgaccgattaagacctccttccgtgaaggcctgtcggttcttgagtac
ttcaacaactctcacggttcgcgtaagggcctcgccgataccgctctgcgtaccgccgac
tcgggttacctcactcgtcgtctggtggacgttgcgcaggatgttatcgtccgcgaggat
gactgcggcaccaagcagggcattcgtgtcccagtggccgttgaggttaaggatgctcag
ggcaacgtcaccggttacaccggacacagcctcatcgagacctctgttgctggccgcgtg
gcttccgttgacatcaaggattccgagggcaacgttctggtaccagctggtgaaaacctc
accgatcagctcatcgagaagctcatcgccgcaggcgttgccgaggtcaaggttcgctcc
gtgcttacctgccagaccccgaccggtgtgtgcgctaagtgctatggcaagtccatggct
accggcaagctcgttgatatcggagaggcagtgggcatcgtcgctgctcagtccattggt
gagcccggtacccagctgacaatgcgtacgttccaccagggtggcgtcggtggtgacatc
accggtggtcttcctcgtgtccaggagctcttcgaggctcgtgttcctaagaatcgcgct
ccgattgcttctgtggcaggtaccgtacaccttgaggatgaaggtaacttctacaccctc
accatcaacccagacgatgggtcagatgttgtggtctacgagaagctctccaagcgtcag
ggtcttgctaccgtgcgggttcctatggaatccaacccgggcgccatgatcgagcgcacc
ttgtcagaaggcgaccacgtgaacgtgggcgaccgtctgctacgcggacctgctgatccg
cacgacgtgcttgaggttcttggccgccgtggtgttgagcagcacctcgtggacgaggtt
caggacgtgtaccgcgcacagggtgtggctatccacgataagcacatcgagatcatcatt
cgtcagatgctgcgccgcggcaccgtcatcgagtccggcgcgacagagttccttccgggt
actctcgttgacctttcggaggccaaggccgctaacgctgaggctattgctgctggtgga
catcccgctgagctccgttcggagatcatgggtatcaccaaggcgtcgttggctaccgag
tcgtggctgtccgctgcgtccttccaggagaccacacgcgtgcttaccgacgccgccatt
aacaagcggtccgataagctgatcggcctcaaggagaacgtgatcatcggtaagctgatc
ccggcgggtaccggtatttcccgttaccgcaacatctccgtcaaaccgactgaggcagct
cgcaatgcggcttactcaatcccaacgtatggagattccatctatggcgatgacagctac
ggtgaattcaccggcgcttccgtgccactggatgaggcctacgatctctaa

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