KEGG   Curtobacterium flaccumfaciens: GBG65_05660
Entry
GBG65_05660       CDS       T06246                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cqf  Curtobacterium flaccumfaciens
Pathway
cqf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cqf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GBG65_05660 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cqf03021]
    GBG65_05660 (rpoB)
   03400 DNA repair and recombination proteins [BR:cqf03400]
    GBG65_05660 (rpoB)
Enzymes [BR:cqf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GBG65_05660 (rpoB)
Transcription machinery [BR:cqf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GBG65_05660 (rpoB)
DNA repair and recombination proteins [BR:cqf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GBG65_05660 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Peptidase_M23
Other DBs
NCBI-ProteinID: QFS79145
Position
complement(1157827..1161315)
AA seq 1162 aa
MAAAPNASTNPKNGRNHSRLSFAKITDTLTVPDLLALQTESFDWLVGNDVWKARLAEGQE
QGRTDLALHSGLEEIFEEISPIEDLGETMQLSFTAPELEDPKYSIDDCKERGKTYAAPLY
VNAEFMNHMTGEIKTQTVFMGDFPLATERGTFIINGTERVVVSQLVRSPGVYFERQQEKT
SDKDIYSARIIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEIMDEFQG
FASIESTLEKDAVLTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGRY
KVNRKLGMDAPLSDSVLTVKDIVATIKYLVSLHAERTTIDGVRDGEPVQLRLDVDDIDHF
GNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFGT
SQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLASFGRINSFGFIETPYRRVVNGEVTKTIDYLTASEEDEFVVAQANAPLTNDFH
FADDKVLVRKKGGEVELVARDEVDYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQR
QAVPLLRSESPLVGTGMEGYTAIDAGDVVTADKAGVVSEVSADAVTLQLDEGGTQTYYLR
KFDRSNQGTSYNHRVIVSAGERVEQGEVIADGPATENGELALGKNLLVAFMPWEGYNYED
AMILSQNLIKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPDLLADLDERGIIRIG
AEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEEGTIIGVKVF
DSQDGDDELGSGVNQRVVVYIAQKRKITAGDKLAGRHGNKGVISTILPVEDMPFLADGTP
VDIVLNPLGVPGRMNFGQVLEIHLGWLAKQGWNVEGIQEWAENLPEAAHSAEPGTKVATP
VFDGAYEREIEGLLDSTLPNRDGERLIGSSGKAQLFDGRSGEPFPEPVSVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
ILGRVKVYEAIVKGENIQEPGIPESFKVLMKEMQSLCLNVEVLSADGQAVSLRDNDDEVF
RAAEELGINISSRFESSSVDDI
NT seq 3489 nt   +upstreamnt  +downstreamnt
ttggctgctgcgcccaacgcatccaccaaccccaagaacggtcgcaaccactcgcgactc
tcgttcgccaagatcacggacaccctcacggttcctgatctgctcgcactccagacggag
agcttcgactggctcgtcggcaacgacgtctggaaggcccgcctcgccgaagggcaggag
cagggtcgtaccgacctcgcactgcactcggggctcgaggagatcttcgaggagatctcc
ccgatcgaggacctcggcgagaccatgcagctctcgttcaccgcgccggagctcgaagac
ccgaagtactcgatcgacgactgcaaggagcgcggcaagacctacgccgctccgctgtac
gtcaacgccgagttcatgaaccacatgacgggtgagatcaagacgcagacggtcttcatg
ggcgacttcccgctcgcgaccgaacgcggcacgttcatcatcaacggcaccgagcgcgtc
gtcgtgtcgcagctcgtccgttcgcccggcgtgtacttcgagcgccagcaggagaagacc
tccgacaaggacatctactcggcgcggatcatcccgtcgcgtggtgcctggctcgagttc
gagatcgacaagcgcgaccaggtgggcgtgcgcatcgaccgcaagcgcaagcagtccgtg
accgtcttcctcaaggccctcggcctgacgagcgaagagatcatggacgagttccagggc
ttcgcgtcgatcgaatcgaccctcgagaaggacgccgtcctcacgaaggaagaggcgctc
aaggacatctaccgcaagctccgtcccggcgagcaggtcgctgccgaggccgcgcgtgcg
ctcctcgacaacttctacttcaacccgaagcgttacgacctggcgaaggtcggccgctac
aaggtcaaccgcaagctcggcatggacgccccgctgtccgactcggtgctcaccgtcaag
gacatcgtcgcgacgatcaagtacctggtgtcgctgcacgctgagcgcaccacgatcgac
ggcgtccgtgacggcgagccggtgcagctgcgcctcgacgtggacgacatcgaccacttc
ggcaaccgtcgcatccgcgccgtcggcgagctcatccagaaccaggtccgcacgggtctg
tcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggcgatcacg
ccccagacgctcatcaacgtgcgtccggtcgtcgccgcgatcaaggagttcttcggaacg
tcccagctgtcgcagttcatggaccagaacaacccgctcgcgggcctgacgcacaagcgt
cgtctctcggccctcggcccgggtggtctgtcccgtgagcgtgccggcgtcgaggtccgt
gacgtccacccgtcgcactacggccgcatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggttcgctcgcgtccttcggtcggatcaactccttcggcttcatcgag
accccgtaccgtcgcgtcgtcaacggcgaggtcacgaagaccatcgactacctcaccgct
tcggaagaggacgagttcgtcgtcgcgcaggccaacgccccgctgacgaacgacttccac
ttcgccgacgacaaggtgctcgtccgcaagaagggtggcgaggtcgaactcgtcgccagg
gacgaggtcgactacatggacgtctccccgcgccagatggtgtcggtcgcgacgtcgctc
atcccgttcctcgagcacgacgacgcgaaccgcgccctgatgggtgcgaacatgcagcgt
caggccgtcccgctgctccgttccgagtcgccgctcgtcggtaccggcatggagggctac
acggccatcgacgccggcgacgtcgtcaccgccgacaaggccggtgtcgtctccgaggtc
tcggccgacgccgtcaccctgcagctcgacgagggcggcacgcagacctactacctgcgc
aagttcgaccgctccaaccagggcacgagctacaaccaccgcgtcatcgtctccgcaggc
gagcgtgtggagcagggcgaggtcatcgccgacggtcccgcgacggagaacggcgagctc
gcgctcggcaagaacctcctcgtcgcgttcatgccgtgggagggctacaactacgaggac
gcgatgatcctgtcgcagaacctcatcaaggacgacacgctctcctcgatccacatcgag
gagtacgaggtcgacgcccgcgacaccaagctcggcaaggaggagatcacccgtgacctc
cccaacgtcagcccggacctgctggccgacctcgacgagcgcggcatcatccgcatcggt
gccgaggtccgccccggcgacatcctcgtcggcaaggtcacgccgaagggcgagaccgag
ctgagtgccgaggagcgtctgctccgtgccatcttcaacgagaagtcgcgcgaagtccgc
gacacctcgctcaaggtgccccacggtgaagagggcacgatcatcggcgtcaaggtgttc
gactcgcaggacggtgacgacgaactcggctctggtgtcaaccagcgcgtggtcgtctac
atcgcccagaagcgcaagatcaccgcgggtgacaagctcgccggtcgtcacggcaacaag
ggcgtcatctcgaccatcctcccggtcgaggacatgccgttcctcgccgacggcaccccc
gtcgacatcgtcctcaacccgctcggcgtccccggccgcatgaacttcggccaggtgctc
gagatccacctcgggtggctcgccaagcagggctggaacgtcgagggcatccaggaatgg
gccgagaacctgccggaggcagcgcacagcgccgagcccggcaccaaggtcgccaccccg
gtgttcgacggtgcgtacgagcgcgagatcgagggcctcctcgactcgaccctcccgaac
cgcgacggcgagcgactgatcggctcgtccggcaaggcgcagctcttcgacggccgctcc
ggcgagccgttcccggagcccgtctcggtcggctacatgtacatcctcaagctgcaccac
ctggtcgacgacaagatccacgcgcgttcgaccggtccgtactcgatgatcacgcagcag
ccgctgggtggtaaggcgcagttcggtggacagcgattcggtgagatggaggtgtgggcg
ctcgaagcgtacggtgccgcctacgccctccaggagctcctgacgatcaagtccgacgac
atcctcggccgcgtgaaggtctacgaggcgatcgtcaagggcgagaacatccaggaaccc
ggcatccccgagtccttcaaggtcctcatgaaggagatgcagtcgctctgcctgaacgtc
gaggtcctctcggccgacggccaggcggtcagcctgcgcgacaacgatgacgaggtcttc
cgcgctgcggaggagctgggcatcaacatctcctcgcggttcgagtcgtcctccgtcgac
gacatctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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