KEGG   Chenopodium quinoa (quinoa): 110712737
Entry
110712737         CDS       T05764                                 
Name
(RefSeq) THO complex subunit 2-like isoform X1
  KO
K12879  THO complex subunit 2
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03013  Nucleocytoplasmic transport
cqi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110712737
  09122 Translation
   03013 Nucleocytoplasmic transport
    110712737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cqi03019]
    110712737
   03041 Spliceosome [BR:cqi03041]
    110712737
Messenger RNA biogenesis [BR:cqi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110712737
Spliceosome [BR:cqi03041]
 Complex C
  Other components
   EJC/TREX
    110712737
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110712737
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 110712737
NCBI-ProteinID: XP_021746881
Position
Unknown
AA seq 1856 aa
MSLPSIEYAYLTGDFLRQLKDGDPNLKLPNPVSVLRFVFELVSSMVYGTLPFQKCKAALD
AVEFSDVISEEELGSYFADIVTQLALDLTMSGEIRARLIKLARWLVECSLVPVRFFQERC
EEEFLWECEMVKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCEGSGDP
NSSSSKIGTIKSLIGHFDLDPNRVFDIVMECFELQPDNKLFLDLIPIFPKSHASQILGFK
FQYYQRMEVQNPVPFGLYRLAALLVKEDLVDLDSIYAHLIPKDEEAFETFNAIRTKRLDE
ANKIGKINLAATGKDLMDDEKQGDVTVDLYVALEMENQAVNESVSELEDCQTLGLLTGFL
LVDDWYHANILFERLSPLNPVAYAQICDELFRLIGKSISSAYDIVHKMHLESFMNGPRLL
ENADSSKSSLILLPKELFEMLTCAGPYLYRDTLLLQKICRILKSYYLSALELISKGDGAP
GPIIDVNINPRLHLREARSRIEEALGSCLLPSLQLVPANPAIGHAIWEVMSLLPYEARYR
LYGEWEKDDERIPMILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTI
VQQIEAYRDMIMPVVDAFKYLTQLEYDVLEYVVIERLAQSGREKLKDDGLNLSDWLQSLA
SFWGHLCKKYPSMELRGLFQYLVNQLKRGKGIELLLLQELIQQMANVQYTENMTEEQLDS
MAGGETLRYLATSYGISRNNKALVKSTNRLRDSLVPKEEPKLAIPLLVLIAQHRSLVVTN
ADAPYIKMLSEQFDRCHGVLLQYVDFLCNAVSPVTAYAQLVPTLDDLVHLYHLDPEVIFL
IYRPVMRLFKCKHSSVSWPLCDRDVPSDAGELVLDLGPPRNPVRWSFLLDTVRTMLPAKA
WNSLSPDLYATFWGLTLYDLYVPRSRYESEIAKQHASLKALEELSDNSGSAIAKRKKDKE
RIQESLDRLTSELQKHEENVASVQRRLANEKDKWLSSCPDTLKINMEFLQRCIFPRCIFS
MPDAVYCAKFVHTLHSLGTPFFNTVNHLDVLICKTLHPMICCCTDYEAGRLGRFLFETLK
IAYHWKSDESVYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLES
AEYMEIRNALIVLTKITSVFPVTRKSGINIEKRVAKIKGEEREDLKVLATGVAAALAARK
PSWVTEDEFGMGYLELKPAPSVAPKSSTGNGASQSETTGGRVSSEAQPLDSGNSLKDQAF
RVKIADAKSERPENVSGNAKKGGSIANGSDVQPTGAQVGVSRSVDSQKQVDEPLNKTGDE
NNAKKVLKLSTDSEQKTAAKRTSAGAGSKQLKQELKDEAKSAKVGSRTGGASASDRDHGS
HLIEGRQTGQAAVLSASVVNGNSAPSSKGLASSTRVDLEASELRGEVGSTKPSNLRGSLR
DDGTDQSDFPRPSHARSAHSPKHDTGGRAVERQQKRTSPAEEPDRLHKRRKGDFDVRDTD
VDLRLADREKIVEQKVIDKSYSSELDKSGTEESALGWVADKHVDRTKEKNSEKYERDYRD
RSERSDKLRGDDISEKARDRSMERYGRERSVDKVPDRRIERGFDGLNDKIRDERSKDDRV
KLRYNEVSGDKSHNDDRFHCQNLPPPPPLPPHVVPQSVNANRRDDDAERRLPTTRHAQRL
SPKHDEKERRRSEESLLTVQDDSRRRREDEFRDRKREEREIYSMKVEEREREKEKERERD
RDRANLLKEEIDSTAASKRRKLKREHIPGGEPGEYSPVAPPPPISMGIAQAYDARERGDR
KGTMVQRPAYFEEPGMRMHVKEPPSKMVRRDVDPMYERDWEDEKRLRAEAKRRHRK
NT seq 5571 nt   +upstreamnt  +downstreamnt
atgtctcttccttcaattgaatatgcatatttgacgggtgattttcttcgccaattgaaa
gatggagaccctaatttgaaattgccaaatcccgtttctgttcttcgcttcgttttcgag
ctcgtgtcgtctatggtatatggtactttgccgtttcagaaatgtaaagcggcgttggat
gcggttgagttttctgatgttatttcagaggaagaattaggttcttatttcgcggatatt
gttacacaactggctcttgatcttaccatgtccggagaaattcgtgctcgcctaatcaaa
ttggcaaggtggctcgtggagtgctcactagttccagtgaggttttttcaggagcggtgt
gaggaagaattcctctgggagtgtgaaatggtcaagataaaggctcaagaactaaaatct
aaagaggttagagtaaatactcgtctgttatatcagcagacaaagttcaacctccttcga
gaagagagtgagggctatgccaagctggtaacccttctttgtgagggttcaggggatcct
aactcatcgtcctcaaagattggcactattaagtctttgattggtcacttcgatttggat
ccaaatcgtgtttttgatattgtcatggagtgttttgaattacagcctgacaataagctt
ttcttggatctcattccaattttccctaagtcacatgcttctcaaattttaggtttcaaa
tttcaatattaccagcgtatggaagtgcaaaatcctgtaccttttggactgtatcggctt
gctgctttgcttgtcaaagaagaccttgttgatcttgatagcatatatgcacatttaatt
cccaaggatgaggaagcatttgaaactttcaatgccattagaacgaagcgccttgatgag
gctaacaagattggaaaaataaatctagctgcaacgggaaaggatcttatggatgatgaa
aagcaaggagatgtgactgtagatctgtatgtcgctttagaaatggaaaatcaagctgtc
aatgaatctgtatcagagctcgaggactgccaaacactaggcttgcttactggtttcctt
cttgtggatgattggtatcatgccaatatcttgtttgagcgtctctcacctcttaatcca
gtggcatatgctcagatttgtgatgagctgttcaggttgattggaaaatcaatttcctca
gcatacgatattgtccacaaaatgcatcttgagagcttcatgaatggtccaagactgttg
gagaatgcagattcttcaaaaagctctctcattctgctacctaaagagctttttgagatg
cttacctgtgctggaccttatctgtatcgtgatactttattgctgcagaagatctgtaga
atattaaagagctattacctatcagctcttgaactcattagcaagggggatggagctcct
ggacctattattgatgttaatattaatccgcgcttgcatctaagagaagcaaggtcaaga
atcgaggaagcactgggatcttgtctgcttccttcattgcagttggtacctgcaaatcct
gccattggacatgcaatttgggaagtgatgagtcttcttccttatgaggcaagatatcgt
ctctatggtgagtgggaaaaggatgatgaacggatacctatgattttggcagcaagacaa
acagctaagttggacacaaggaggatcttgaaacggcttgcaaaggaaaatctaaaacag
cttggtcgtatggttgctaagcttgctcatgccaatcccatgactgttctccgaacaatt
gttcaacagattgaggcctaccgagatatgatcatgccagttgtggacgcatttaaatat
ttgacacagttggagtatgatgtcttggaatatgttgtgatagagagactggcgcaaagt
ggtcgtgaaaagctgaaagacgatgggcttaacttgtcagattggcttcaatctctggct
tcattttggggacatctatgcaagaagtacccttcaatggagctgagaggtctgtttcaa
taccttgtcaatcaattgaaaaggggtaaaggaattgaactacttctactgcaggagttg
atacaacaaatggcaaatgttcaatacacggaaaacatgactgaggagcagctggattcc
atggcaggtggagagactttgcgatatctagccacttcttatggcattagccgaaacaat
aaggcactagtcaaatctactaaccgactgagggattccttagttccaaaggaagaacca
aagctggctatccctctgttggtgctaattgcacagcaccgttctctggttgttaccaat
gcagatgcaccttatataaaaatgcttagtgagcaatttgacaggtgccatggggtactc
cttcagtatgtggattttctttgtaatgctgtcagtccagtaactgcatatgcacaacta
gtacctactcttgatgatcttgttcatctataccatcttgatccagaggttatcttcttg
atctatcgaccagttatgaggcttttcaagtgtaaacatagctctgtctcttggccttta
tgtgatcgtgatgtgccaagtgatgctggcgaactggttttggatcttggacctccacgc
aatccagtgaggtggtcttttcttctcgatacagttagaactatgttgccagctaaagca
tggaacagcctgtctccagatttgtatgcaactttctggggtctgacattatatgacctt
tatgttcctcggagtcgctatgaatctgagattgcaaaacagcatgcttccctaaaggct
ctggaagagctctctgataattcaggctctgcaatcgccaaacggaagaaagataaagaa
aggattcaagagtcattggatcgtctcacaagtgagctccaaaaacatgaagagaatgtc
gcttctgtgcaaaggaggcttgcaaatgaaaaagataagtggttgagctcttgtcctgat
acattaaagataaacatggagtttctacagcgatgtatttttccacgctgtattttcagc
atgccagatgctgtttattgtgcaaagtttgtccatactcttcactccttgggcacacct
tttttcaacacagtcaaccatcttgatgttttaatctgcaaaactttacatccaatgata
tgctgctgtactgactatgaggctggtagacttggcagatttttgtttgaaacgctaaaa
attgcgtaccattggaagagtgatgaatcagtctatgaacgtgaatgtggtaacatgcct
gggtttgcagtttattatagataccccaatagtcagcgggttacatatggccagttcatt
aaggtgcattggaaatggagtcaaagaatcacccgactgttgatacagtgcttggaatct
gcagaatatatggaaattcgaaatgcactcatcgtgttgacaaaaataacaagtgtattt
ccagttactaggaaaagtggaattaacattgagaaacgagtggcaaaaattaaaggtgaa
gagagagaagatttgaaggttctagccactggtgttgcagctgctttagctgctagaaag
ccgtcatgggttactgaagatgagtttgggatgggatatcttgaactgaaacctgcaccg
tctgtcgctccaaaatcttccacaggtaatggtgcttctcaaagtgaaactactggggga
agagtttcctctgaagctcagcctttggattcagggaattccctgaaagatcaagcattt
cgagtgaagattgcagatgccaagtcagaaagacctgaaaatgtttcaggaaatgctaaa
aaaggtggttcaattgcaaatgggtcagatgtgcagccaacaggagcgcaggtgggagtg
tcacgatcagtagatagtcaaaagcaggtagatgagcctttaaacaagactggggatgaa
aacaatgccaaaaaagtgttaaagttatctacagacagtgagcaaaaaactgctgctaaa
cgtacctcagctggagctggttcaaagcaacttaaacaagagcttaaagatgaggcaaag
tcagccaaggttggtagcagaacaggtggtgcttcagcaagtgatagagatcatggaagc
catcttatagaaggcaggcaaactgggcaagctgctgttttgtctgcatctgttgtaaat
ggtaattcagctccttcatctaaaggcttggcatcttccactagagttgacttagaagct
agtgaattgaggggagaagttggatccacaaaaccctctaatttaaggggttctttgagg
gatgatggcacagatcaatctgattttcctcggccttcacatgcccgttcagctcactct
ccgaagcatgatactggtgggagggctgtagaaagacaacaaaaaagaactagtcctgca
gaagaaccagataggctacataaacggaggaaaggtgattttgatgtgagagatacggat
gttgatcttcgattagccgatcgggagaaaatagttgagcaaaaagttatcgacaaatcc
tactcttcagagttggataagtcagggactgaggaatcagctttaggttgggttgctgat
aaacatgttgataggacaaaggagaaaaatagtgaaaaatatgagagggactacagagat
agatccgagcgcagtgataaactccggggtgatgatatttctgaaaaggcgagagacaga
tcaatggaacggtatggaagagagcgctctgttgacaaagtaccagatcgaaggattgaa
aggggttttgatggccttaatgacaaaatcagggatgaaagaagcaaggatgatagagtt
aaattgcgttacaatgaagtatctggtgataaatctcataatgatgatcggtttcattgt
cagaatttgccacctccaccccctttaccacctcatgtggttccacaatctgtaaatgct
aatcgaagagatgatgatgctgaaagaagattgccaaccactaggcatgcccaaaggctt
tcccctaaacatgatgaaaaagaacgtagacggtcagaggaaagcctgttgactgtgcaa
gatgattccaggcgtagaagagaagacgaattccgagatagaaagcgtgaagaacgggag
atttattcgatgaaggtagaggagagagaaagggagaaggagaaagaaagagaacgggac
agggatagagcaaaccttttgaaagaggaaattgattcaactgcagcctcaaaaagacgg
aaacttaaaagggagcatattcctggtggggaacctggtgagtattcccctgttgctcca
ccacccccaatttccatgggcattgcacaggcgtatgatgccagggaaagaggagatcga
aaaggtacaatggttcagcgtccagcatactttgaggaaccaggtatgaggatgcatgta
aaagaaccaccaagcaagatggtacgacgtgatgttgacccaatgtacgaacgtgattgg
gaggatgagaaaagactgagagcagaagcaaaacgcagacacaggaaatga

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