KEGG   Capsella rubella (pink shepherd's-purse): 17878457
Entry
17878457          CDS       T02984                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
  KO
K07466  replication factor A1
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03030  DNA replication
crb03420  Nucleotide excision repair
crb03430  Mismatch repair
crb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    17878457
   03420 Nucleotide excision repair
    17878457
   03430 Mismatch repair
    17878457
   03440 Homologous recombination
    17878457
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:crb03000]
    17878457
   03032 DNA replication proteins [BR:crb03032]
    17878457
   03400 DNA repair and recombination proteins [BR:crb03400]
    17878457
Transcription factors [BR:crb03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    17878457
DNA replication proteins [BR:crb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    17878457
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     17878457
   MMR (mismatch excision repair)
     17878457
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     17878457
SSDB
Motif
Pfam: Rep_fac-A_C Rep-A_N REPA_OB_2 tRNA_anti-codon zf-CCHC CDC24_OB3
Other DBs
NCBI-GeneID: 17878457
NCBI-ProteinID: XP_006283088
UniProt: R0F3Q6
Position
Unknown
AA seq 879 aa
MEVSLTAGAIGKIMSGEVTKEIDMMPVLQVTEVRQIKSQQEPVRERFRMLVSDGTQLHQG
MLGADLNHLVKSGTLQAGSIVRLTKFLCNVIKDRRIVIIMQVDVITTKADIIGHPVLGGK
TNDQRVADSSNKSNATGFEQQGRSEPIASCQINNTETGRSNAAISPEVGHRQGFGAGSSV
PTSTPSTWAYNNTETGRSNATISSEVGQRQGFSAGSSVPASAPSTRAYNTPETGRSNAAF
SPEVGQRQGFGAGSSVPASVPSTRAYNNPSAGQGVPRQDHARDPPTSYPPRQPAYQPQIP
PPMYANRGPMARNEAPPRIIPINALSPYSGRWTIKARVTNKAGLRQYSNPRGEGKVFSFD
LLDADGGEIRVTCFNAVADQFFDQIVVGNVYLISRGSLRPAQKNFNHLPNDYEIMLDNAS
TIKQCYEEDAVIPRHQFHFRIIGDIESMENNSIIDVIGIVSSISATVVIMRKNGTETQKR
SLQLKDMSGRSVEVTMWGDFCNAEGQRLQNLCDSGGFPVLAVKAGRISEFNGKAVSTIGS
SQLFIDPDFVEAQKLKDWFEREGKSVPCISISREFTGSGRVDVRKTISQIKDEKLGTSEK
PDWITVSATIIYTKFDNFCYTACPIMNGDRPCSKKVTSNGDGTWTCEKCDKSVDECDYRY
ILQLQIQDHTDLTWVTAFQEAGEDIMGMSAKELYHVKYVSEEEEKFESIIRNVAFTKYIF
KLKVKEETFSDEQRVKATVVKVDKVNYSSDTRTILDAMDKLRNIDATSLPIKPEGSNYSA
EAVNTSIRSSGTRDPSSVDRRDFGLHAHQSGQYGNQYSSGSGAHGGGATSCNVCGNSGHV
SANCPSANEPQGQYMGNSYRGTSGSYGGGGPPRQHVGSY
NT seq 2640 nt   +upstreamnt  +downstreamnt
atggaggtaagtttgacagcgggggcaatcgggaagataatgagtggagaagtgacgaag
gagatagatatgatgccggtgttgcaagtgacggaagtgaggcagattaagagtcagcaa
gagccagtgagagagaggtttaggatgttggtatcagatgggacacaattgcatcaggga
atgctcggggctgatctgaaccatcttgtgaaatcaggaactctccaagccggttccatt
gttcgccttactaaattcctctgtaatgtcatcaaagatcgaaggattgttattataatg
caagtggatgtgattacaacgaaagctgatataattggacatcctgttctaggaggaaag
actaatgatcaacgggtagcggattctagtaataagtcaaatgctactggttttgagcaa
cagggtaggagtgaaccgattgctagctgtcaaattaacaatactgagacagggagaagc
aatgctgctatttcaccagaagttggtcatagacaagggtttggtgctggttctagtgtt
cctacatcaacaccttccacttgggcatacaacaataccgagacagggagaagcaatgct
actatttcatcagaagttggtcaaagacaagggtttagtgctggttctagtgttcctgct
tcagcaccttccactcgggcatacaacactcccgagacagggagaagcaatgctgctttt
tcaccagaagttggtcagagacaagggttcggtgctggttctagtgttcctgcttcagta
ccttccactcgggcatacaacaatccatctgcaggtcagggagtccctaggcaggaccat
gctcgtgatcctccaactagttatcctcctcgtcagcctgcttatcagccgcagatacca
ccaccgatgtatgcaaacaggggaccaatggcaaggaacgaagcacctcctaggataatc
ccaattaatgctcttagcccgtactcgggtaggtggaccatcaaggccagagtcacaaat
aaagcagggcttaggcaatacagtaatccccgtggggaggggaaagtattcagctttgat
cttcttgatgctgatggtggagaaatacgggtcacttgttttaacgctgtggctgatcaa
ttctttgaccagatcgttgttggtaatgtttatctgatttcgaggggaagtttgcggcct
gctcagaagaactttaatcatcttcccaatgattacgaaatcatgctggataatgcatca
actataaaacaatgctatgaggaggatgctgtcattccacgccatcagttccatttccgt
atcataggtgatattgaaagcatggagaataacagcatcatcgatgtaattggtattgtg
tcgtctatcagtgctactgtagtaataatgaggaaaaatggaactgaaacacagaaaaga
tcacttcagttgaaggatatgtcaggccgaagtgtcgaggtaactatgtggggtgacttc
tgcaatgccgaaggacagaggctgcaaaatctttgtgattctggtgggtttccggtactt
gctgttaaggcgggcaggatcagtgaatttaacggaaaggcagtgagcaccattggatca
agtcaactgttcattgacccagattttgttgaagcccagaaactgaaggactggtttgag
agagaaggaaaaagtgtcccttgcatctccatttctagggagtttaccggcagtggcaga
gtagatgttcgcaaaacaatttctcagattaaagatgagaagctagggacctcagaaaaa
ccagactggattacagtcagtgccactattatatacacgaagtttgacaacttctgctac
acagcttgtcctatcatgaatggtgatcggccatgcagcaaaaaggtcacaagcaatgga
gatggcacatggacttgtgaaaagtgtgataaaagcgttgatgaatgtgactacaggtat
atactgcagctccagatacaggaccatacggatcttacctgggtcacagcattccaggag
gctggtgaagatataatgggcatgtctgctaaagaattgtatcatgtgaagtatgtaagt
gaagaggaggaaaaattcgaaagtatcatccgtaatgttgcttttaccaagtacatcttc
aagctgaaggtaaaagaagaaacatttagcgacgaacagcgtgtaaaagcaacagttgtg
aaagtggacaaggtaaactattcatcagataccaggactattttagatgccatggataaa
ctcaggaacatagatgcaacttctcttcccataaagccagaaggatccaattacagtgct
gaggcagtaaacactagtataagaagctcaggaaccagagatccttcatcagtcgacaga
agggattttggtttacatgcacatcaatcgggtcaatatgggaatcagtatagtagtggc
tctggggctcatggtggtggtgctacgagctgcaatgtctgtggaaacagtggtcatgtt
tctgcaaactgtccaagcgctaacgagccacaagggcagtacatgggaaactcttacaga
ggcacgtctggaagttatggaggaggaggaccaccaaggcaacatgttggaagctactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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