KEGG   Capsella rubella (pink shepherd's-purse): 17879200
Entry
17879200          CDS       T02984                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03020  RNA polymerase
crb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    17879200
  09124 Replication and repair
   03420 Nucleotide excision repair
    17879200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crb03021]
    17879200
   03400 DNA repair and recombination proteins [BR:crb03400]
    17879200
Enzymes [BR:crb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     17879200
Transcription machinery [BR:crb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     17879200
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      17879200
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 17879200
NCBI-ProteinID: XP_006282990
UniProt: R0GXL7
Position
Unknown
AA seq 1838 aa
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI
DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK
FKQAMKIKNPKNRLKKILDACKNKTKCDGGDEIDDVHSQDTEEPVKKSRGGCGAQQPKLT
IEGMKMIAEYKITRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKFA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLLRYSAWHSDSETGFITPGDTQVRIERGELLAGTLCKKALGTSNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLETDRF
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV
PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI
MNDEGPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPISGT
PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYS
PSNARLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGY
SPTLPGYSPSSTGQYTPHEGDKNDKTGKDVSKNDKSNP
NT seq 5517 nt   +upstreamnt  +downstreamnt
atggatacacgatttccgttctctccggccgaggtctccaaagtccgggtggtccagttt
ggtatactcagccccgatgagatcaggcaaatgtctgttatacatgttgagcatagtgag
acgacggagaagggtaaacctaaggtgggagggttgagtgatatccggcttggtacgatt
gatcggaaggtgaagtgtgagacatgtatggctaatatggctgagtgtcctgggcacttt
ggccatcttgagctcgccaagccaatgtatcatgttggttttatgaagactgtattgagt
atcatgagatgtgtttgcttcaattgctccaagattttagctgatgaggaggagcataag
tttaagcaggctatgaagataaagaatcccaaaaataggcttaagaagattctcgatgcc
tgcaaaaacaagaccaaatgtgatggtggtgatgaaattgatgatgtccacagccaagac
accgaagaaccagtcaaaaagagccggggtggatgtggtgcacaacaaccaaagctgact
attgaaggtatgaagatgattgcagagtacaaaattacaaggaagaaaactgacgagcca
gatcagcttccagagcctgcagaaaggaaacagacacttggtgctgatagggttttgagt
gttttaaaaaggattagtgacgaggattgccaactcttagggttcaaccctaagtttgct
cgtcctgactggatgattcttgaagtccttcctattcctccacctcctgtcagaccatct
gtaatgatggacgccacttccagaagtgaggatgacttgacccatcagctagctatgatt
attcgacacaatgagaacttgaaaagacaggaaaaaaatggagcgccagctcatattata
tcagagtttacacaactcttgcagtttcatatagctacatattttgataatgagttgcct
ggacagccaagggctactcaaaaatcagggaggcctattaagtcaatatgtagtaggctg
aaggcaaaggaaggtagaatcagaggaaacttgatgggaaaacgtgttgatttttcagca
cgtactgttattacaccagatcctacaataaatattgatgaacttggtgtaccatggagt
attgctctgaatctcacatacccagaaacagttactccatataatattgaaagattaaag
gagcttgttgattatgggccacatcctccacctggcaagactggagcgaaatatataatt
agggatgatggccaaaggctagatcttcggtaccttaagaagagcagtgatcatcatttg
gaacttggatacaaggttgagcggcatttacaggatggcgattttgttttgtttaatcga
caaccaagtctgcacaaaatgtctatcatgggtcacaggattcggattatgccatattcc
actttccgtctgaatttgtctgtcacgtctccttacaatgctgattttgatggggatgag
atgaacatgcatgtaccccagtcatttgagaccagagcggaggtgttagagctgatgatg
gtccctaaatgtattgtctccccccaggcgaatcggcctgtgatgggaattgtgcaggat
acccttctagggtgtcggaaaattactaaaagagataccttcatagaaaaggatgtattc
atgaatacgcttatgtggtgggaagattttgatgggaaagttccagctcctgcaattttg
aagccacgtcctctttggactggcaaacaagtttttaatcttatcataccaaaacagata
aatctgttgaggtactctgcttggcattcagattcagagactggatttataactccggga
gatacccaagtgcgaattgaaagaggggaacttcttgccggaactctttgcaaaaaggcc
cttggtacatctaatggaagtctcgtgcatgtcatttgggaagaggttggtcctgatgct
gccaggaaattcctaggtcatactcagtggcttgtcaattactggcttctgcagaatggt
tttaccattggaattggtgacacaattgctgattcatcaaccatggagaaaattaatgaa
actatttctaatgcaaaaacggctgtgaaagatcttatccggcagttccaggaaaagaaa
ttggaccctgaacccggccgaactatgacagagacatttgagaacagggttaatcaagtc
ttgaacaaagctcgtgatgatgctggaagcagtgctcaaaagagtttagcagaaaccaat
aaccttaaggctatggtgacagcaggatcaaaaggaagtttcattaatatttctcaaatg
acagcgtgtgtcggtcagcaaaatgttgaagggaagcggattccatttggatttgatggt
cgaacattgccacatttcaccaaagatgattatggtcccgaaagtcgtggatttgtagaa
aattcatacctacgtgggctgacacctcaagagttctttttccatgccatgggaggaagg
gaaggtcttattgatactgctgtgaagacatcagaaactggatacattcagaggcgtttg
gtaaaggctatggaggatattatggttaaatatgatgggacagtcagaaactcgttgggt
gatgttattcaatttctctatggggaagatggtatggacgcagtatggatagaatcacag
aagctggattccttgaaaatgaagaaatcggagtttgataggactttcaagtatgagatt
gacgatgaaaactggaatcctacatacctaagtgatgaacatctggaggacttgaaaggg
attcgggagttgcgtgatgtatttgatgctgaatatcagaaacttgagactgacagattc
caacttgggacagaaattgcaacaaatggtgatagtacttggccattgcctgttaatatc
aagaggcatatctggaatgcgcagaagactttcaagattgacttgcgcaagatttcggat
atgcaccctgttgaaattgtcgatgcggtagataaactgcaagagaggctgttggttgtt
ccgggtgatgatgcattgagtgtggaagcacagaaaaatgcaacactgttctttaacatt
ttgcttcgcagcactcttgctagtaaaagagtattggaggaatacaaactcagccgcgaa
gcttttgagtgggtcattggtgaaatagaatcaaggtttttacaatcgctagtggcccca
ggggaaatgatcggttgtgttgctgctcaatcaattggagaacctgctacgcagatgact
cttaacaccttccattatgctggtgtcagtgcaaagaatgttacacttggtgttcccagg
ttgcgtgaaattattaatgtagctaaaagaatcaaaacaccgtccctatcagtctatctt
accccggaagctagcaaatcaaaagagggggctaagactgttcagtgtgctttggagtat
actactctcaggagtgtcactcaagctacggaagtctggtatgacccagatccaatgagt
actatcattgaagaggacttcgaatttgtgaggtcctactatgaaatgccagatgaagat
gtttctcccgataaaatatctccttggctgcttcgtatagagttgaatcgtgagatgatg
gttgataagaaattgagtatggcggatattgcggagaagatcaaccttgagtttgatgat
gacctgacttgcatattcaatgatgataatgctcaaaaattgatccttcgaattcgtatt
atgaacgatgaaggcccaaagggagaaatgcaagatgaatcagctgaagatgatgttttc
cttaaaaagattgagagcaacatgctgacagaaatggcgctcaggggtattccagacatc
aacaaagttttcattaaacaggttagaaaaagcaggtttgatgaggaaggaggattcaag
acatctgaagagtggatgttagatacagaaggtgttaatctcttagctgttatgtgccat
gaagatgtggatccaaagaggacaacaagcaatcacttgattgaaattattgaagttctc
ggaattgaggcagttcgccgtgctttgttggatgaactccgtgttgtgatatcctttgat
ggctcttatgtgaattatcggcatcttgccatcttgtgtgataccatgacgtatcgcggt
catctgatggccatcactcgacatggtattaatagaaatgacactgggcctctgatgagg
tgctcttttgaagaaacagttgatattctgttagatgctgcagcttatgctgagacagac
tgcttgcggggtgttactgagaatataatgctgggtcaacttgcaccaattggaacagga
gactgtgaactgtatctgaatgatgagatgctgaagaatgcaattgaactccagctaccc
agctatatggatggtctggaatttggaatgactcctgctcgctcaccaatatcagggact
ccttaccatgaaggcatgatgtccccgaactacctgttaagtccaaatatgcgtttgtcg
ccaatgtcagatgcacagttttctccatatgttggtggaatggccttttcgccttcttca
tctccaggctatagcccgtcatctcctggatacagtcctacttcccccggttacagtccc
acttcacctggatatagcccgacttctcctggttatagtcccacttcgcctacctacagt
ccaagttctcctggctatagtccaacaagccctgcttactctcctacaagtccttcctat
tcccccacctcgccgagctacagccccacgtctccaagctatagcccaacatctccaagc
tacagtccaacatctcctagctacagtccaacatcccctagttacagcccgacttcacct
gcttacagcccaacatcacctgcttatagtccgacttcacctgcatacagtccaacctct
ccttcttacagtccaacttcaccatcttacagtccaacatcgccttcttacagccctacc
tcaccatcctatagtccgacatcaccatcttacagccctacttcacctgcatacagcccc
acatctcctggctacagcccaacttccccaagttacagtccaacatcaccaagctatggc
cctacgtctccaagctacaaccctcagtctgctaaatacagcccatctcttgcttactct
cccagcaatgcaagactttcaccatctagtccgtacagtcctacatctccaagctatagc
ccgacatcaccatcatactcacccacatctccatcttattcaccttcgagtccaacatac
agtcccagcagcccttacagctcaggagcaagccctgactacagcccaagcgcaggctac
tcgccaacacttcccggttattcaccatcctccacgggtcagtataccccacacgaggga
gataaaaatgacaagactggaaaagatgtcagtaagaatgataaaagcaatccttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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