KEGG   Capsella rubella (pink shepherd's-purse): 17882685
Entry
17882685          CDS       T02984                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03013  Nucleocytoplasmic transport
crb03015  mRNA surveillance pathway
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    17882685
  09122 Translation
   03013 Nucleocytoplasmic transport
    17882685
   03015 mRNA surveillance pathway
    17882685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crb03019]
    17882685
   03041 Spliceosome [BR:crb03041]
    17882685
Messenger RNA biogenesis [BR:crb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     17882685
Spliceosome [BR:crb03041]
 Complex C
  Other components
   EJC/TREX
    17882685
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    17882685
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 17882685
NCBI-ProteinID: XP_006289730
UniProt: R0FFI8
Position
Unknown
AA seq 427 aa
MGDARDNEAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLNEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgggagacgctagagacaacgaagcctacgaggaggagcttctggattacgaggaagaa
gacgagaaggtcccagattctggaaataaagttaacggcgaagccgtgaagaaaggttac
gttggaatacacagttctggattcagagacttcctcttaaaaccggagcttctccgagct
attgttgactctggatttgaacatccatctgaagttcaacatgaatgtatccctcaagct
atcttgggcatggatgttatttgccaagcaaaatctggtatgggaaagactgctgtgttt
gtgttgtctactctgcaacagattgaaccgtctcctggacaggtttctgcacttatcttg
tgccatacaagagagctggcttaccagatctgcaatgagtttgtgcgattcagtacctat
ctgcctgatacaaaggtgtcagtgttctatggtggagtcaacatcaaaattcataaagac
ttgctgaagaatgaatgtcctcacattgttgttggtacacctggtagggtgcttgcactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgacgagtgtgat
aaaatgctcgagtcacttgacatgcgaagggatgtgcaagagattttcaagatgactcct
catgataagcaagttatgatgttctcagctacactcagcaaagagatacgcccagtctgc
aagaagtttatgcaagatccaatggaaatatatgttgatgatgaagccaagttgactctt
catggacttgtccagcactacatcaaactgaacgagatggagaagaaccgcaagttgaat
gaccttcttgatgcgttggacttcaatcaagttgtcatatttgtgaagagcgtgagcaga
gctgcggagctgaacaagttgctggtagaatgcaatttcccctcaatatgcatccactct
ggcatgtcgcaagaagagaggttgactcgctacaaaagcttcaaggaaggacacaagagg
atccttgtggcaacagatttggtggggagaggcattgacattgagcgtgtcaatattgtt
atcaactatgacatgccagattctgctgatacatatcttcacagggttgggagagctggt
agatttggaacaaagggtctagcgatcacatttgttgcatcagcttcagattctgatgtt
cttaatcaggtacaagagaggtttgaggttgatatcaaggagctccctgaacagattgat
acctccacatacatgccttcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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