KEGG   Capsella rubella (pink shepherd's-purse): 17885484
Entry
17885484          CDS       T02984                                 
Name
(RefSeq) histone deacetylase 7
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03082  ATP-dependent chromatin remodeling
crb03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    17885484
   03083 Polycomb repressive complex
    17885484
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crb03036]
    17885484
Enzymes [BR:crb01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     17885484
Chromosome and associated proteins [BR:crb03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     17885484
   HDAC complexes
    Sin3A-HDAC complex
     17885484
    BRAF-HDAC complex
     17885484
    REST complex
     17885484
    SHIP complex
     17885484
    MiDAC complex
     17885484
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     17885484
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    17885484
  Chromatin remodeling factors
   NuRD complex
    17885484
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 17885484
NCBI-ProteinID: XP_006292467
UniProt: R0HJH2
Position
Unknown
AA seq 410 aa
MENAASLATGPDGRKRRVSYFFEPEFGQPKEPFASHIAHNLIFKHGLQHHMEINRPILAG
ASDFLRFHTRDYVQFLASAKPMSLKDRSGYIDATRFFSNNVALARYGPYGPVFHSIFDYC
CAYVGCSLSAAAKLNRRESDIAINWSGGMHRAKNDKGSEFCFVNDVVLGILELLKAFQRV
LYIDIGCRRGDGVEEAFYDTDRVMTVSFHTDQDTYTFFQRSEDRRELYTLNAPLKNHLKD
KSLRNLFRPVITKAMEVYQPEVIVLQCGADSLADDMAPKFNLKIKGHGDCLQFIRSFNVP
LMVLGGGGYHFELAARCWCYETAIAVGVGEQLENDLKVNEFHYKPNYKEDLNTPRDIELI
RNGLLRQLSQIIHVPSVQFQNTPPTSQATEPAEVDMEKRQVPSNLRQSKL
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggaaaacgcggcgagcttagcgacgggtcccgacggacgtaaacggcgggtgagctac
ttcttcgagccggagttcggccaaccgaaagaacccttcgcgagccacatcgctcacaac
ctcatcttcaaacatggcctccagcaccacatggaaatcaaccgcccaattctcgccggc
gcttccgatttcttgcgattccacacgcgggactatgtccagttcctcgcctcagccaag
ccgatgtccctcaaggatcgttccggctacattgacgccactcgcttcttcagcaataac
gtggccctggccaggtacggaccgtacggtcccgtcttccatagcatcttcgattattgc
tgtgcgtacgttggctgttctttaagcgccgccgccaaattgaaccgtcgggaatctgat
atcgccatcaactggtctggcgggatgcaccgtgccaagaatgataagggttctgagttt
tgcttcgtcaatgacgttgtccttgggattctcgagttgctcaaggctttccagagagtt
ctctacatagatattggctgtcgccgtggggatggagtggaagaagcattttacgatact
gatagagttatgactgtatctttccacactgatcaggacacttacacatttttccaaaga
agtgaagacaggagagagttgtatactctaaatgcaccattaaagaatcatctcaaggat
aaaagtcttcgcaacttgttcagacctgttatcaccaaggcaatggaagtttatcagcca
gaagtaattgttcttcagtgtggtgctgattcattagctgatgatatggcgcctaagttc
aacttgaaaatcaagggtcacggtgattgcctccagttcataagatcttttaatgttcct
ctcatggtcttaggtggtggtggttatcattttgaacttgctgcccgttgctggtgctac
gagacagctattgcggttggggttggggaacaacttgagaacgatctcaaagtcaatgag
tttcattacaagccaaactacaaggaggacttaaacacaccaagagatattgagcttata
aggaacggattactacggcaactttcacaaataatacacgtacctagcgtacagtttcaa
aacactccaccaaccagtcaagccacagaaccggcggaagtggacatggagaagagacaa
gttccaagcaatctgaggcaatccaagttgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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