KEGG   Capsella rubella (pink shepherd's-purse): 17888373
Entry
17888373          CDS       T02984                                 
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF128
  KO
K11982  E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:crb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:crb04131]
    17888373
   04121 Ubiquitin system [BR:crb04121]
    17888373
Enzymes [BR:crb01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     17888373
Membrane trafficking [BR:crb04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab associated proteins
    17888373
Ubiquitin system [BR:crb04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    17888373
SSDB
Motif
Pfam: zf-RING_2 zf-RING_11 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-rbx1 zf-C3HC4_3 zf-RING-like zf-ANAPC11 zf-RING_16 zf-RING_5 Zn-ribbon_8 zf-Nse
Other DBs
NCBI-GeneID: 17888373
NCBI-ProteinID: XP_006295723
UniProt: R0G0F9
Position
Unknown
AA seq 183 aa
MSSSSNQNQLVMWNYMCLECDVDIAVIAIPSSSSTSHPHCPQCGIISSFISSGPFGVRSA
EDDDSEDEEEEQQILDPMEAIPTVEISSSMVRGSSSDESSLLCAICMEDFVVGESARRLP
CNHLYHNDCIVPWLTSHNSCPLCRCRLXNSYWRRQWFDVLTLEDDLEEDRTGLTLDVYQN
LNG
NT seq 552 nt   +upstreamnt  +downstreamnt
atgtcttcctcctctaaccaaaaccaattggtgatgtggaattacatgtgcctagaatgt
gacgtcgatatcgcggttatcgctatcccatcttcttcctctacttctcatccacactgt
cctcaatgtggtatcatttcttctttcatttcttcgggcccttttggagttagatctgct
gaggatgatgatagcgaagacgaggaggaggagcaacaaattctcgatccaatggaagca
attccgaccgttgagatctcatcttcaatggtgcgtggttcttcctcagacgaatcttct
ttgctatgcgccatttgtatggaagatttcgttgtcggagaatctgctaggagattgcca
tgcaaccatttataccataatgattgcattgttccttggctcacaagtcacaactcctgt
cctctctgtcgctgccggttgnncaatagctactggagacgacagtggttcgatgtattg
accctagaggatgacttggaggaagatcgtacgggactcactctcgatgtgtaccaaaat
ctaaacggctaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (26)   

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