KEGG   Capsella rubella (pink shepherd's-purse): 17888954
Entry
17888954          CDS       T02984                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 5B
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03020  RNA polymerase
crb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    17888954
  09124 Replication and repair
   03420 Nucleotide excision repair
    17888954
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crb03021]
    17888954
   03400 DNA repair and recombination proteins [BR:crb03400]
    17888954
Transcription machinery [BR:crb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     17888954
  RNA polymerase III system
   RNA polymerase III
     17888954
  RNA polymerase I system
   RNA polymerase I
     17888954
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      17888954
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 17888954
NCBI-ProteinID: XP_006295858
UniProt: R0G0P3
Position
Unknown
AA seq 224 aa
MEGKGKEIAVRPSINKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRTLYGE
IPDINRLRISAEHRLDSTKKIAVMFCGTGMVKVNEMRGIAADVLNRESISGLILVLQGHI
TNQALKAVDLFTFKVELFEITELLVNVTKHVLRPKHQVLNDQEKESLLKKFSIEEKQLPR
LSTKDPIARYYGLETGKVMKVTYKDELSESHVTYRCVGEGACVR
NT seq 675 nt   +upstreamnt  +downstreamnt
atggaggggaaagggaaagagatagctgttagaccgtccattaacaaatcaagtgtagag
tgtcacaaatactacttggcgcgtcgaaccaccatggagatgctccgagacagaggatac
gatgtctctgacgaagacattaacctctccctccaacagttccgaacgctctatggcgaa
attcctgacataaatcgactccgtatctccgccgaacatcgtttagattcaactaaaaag
attgcggtcatgttttgtggaactggtatggttaaagtcaatgagatgcgaggcattgca
gcggatgttcttaaccgagaaagtataagcggattgatactggttctgcaaggtcacata
acaaatcaagctctaaaagccgttgatcttttcacgtttaaggtcgagttattcgagata
accgaattgctggttaacgtaaccaaacatgtcttaaggccaaaacatcaggttctgaat
gatcaagagaaggaatcacttctcaagaagttcagtatcgaggaaaaacaacttcctcgg
ttgtcgactaaagacccgattgcgcgatactatggactagagacagggaaagtcatgaag
gtcacatacaaagacgagctcagtgagtcgcatgttacataccgatgcgtcggagaaggt
gcttgcgtccgataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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