KEGG   Capsella rubella (pink shepherd's-purse): 17889800
Entry
17889800          CDS       T02984                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    17889800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crb03021]
    17889800
Enzymes [BR:crb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     17889800
Transcription machinery [BR:crb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     17889800
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 17889800
NCBI-ProteinID: XP_006293553
UniProt: R0FV63
Position
Unknown
AA seq 1959 aa
MEEASSSEVPEGEIVGITFALASHHEICIASISESSINHASQLSNPFLGLPLEFGKCESC
GATEPDKCEGHFGYIQLPVPIYHPAHVIELKQMLSLLCLKCLKIKKAKSTSGGLAERLLG
VCCEEASHISIRDRASDGASYLELKFPSRSRLQAGCWNFLERYGYRYGSDYTRPLLAREV
KEILRRIPEETRKKLAAKGHIPQEGYILEYLPVPPNCLSVPDISDGLSSMSVDPSRIELK
DVLKRVVAIKTSRSGETNFESHKAEANDMYRVVDTYLQVRGTAKAARTMDMRYRVSKISD
SSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEDRVSVHNI
RYLQELVDKKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHK
HSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVDKQLL
SSHTGQLILQMGCDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWT
VFQILQLAFPERLSCKGDRFMVDGSDLLRFDFGVDVMASIISEIVTSIFLEKGPKEALGF
FDSLQPLLMESLFAEGFSLSLEDLSMSRADMAVIHNLIIRETSPMVSRLRLSYEDELQLE
NSIHKVKEVAANFMLKSYSMRNLIDMKSNSAINKLVQQTGFLGLQLSDKKKFYTKTLVED
MALFCKRKYGRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFK
NLMAVLRDIVITNDGTVRNTCSNSVVQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPA
YKAVLDSTANSNSSWELMKEVLLCKVNFQNNTNDRRVILYLNECRCGKRFCQENAACTVR
NKLNKVSLKATAVEFLVEYRKQQTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKC
EDVINSLGQKKKKKATDDFKRTSLSVSDCCSFRDPCGSKDSDMPCLMFSYNATNPDLERT
LDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSA
VKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVKMVS
KGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEK
CHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTSSD
AFVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDDGKQSESNWEKSSSWD
NGCSGGSEWGVSKSTGGESNTESNWEKTTSVEKEDAWSGWNTKKDAQESSKSDSGGAWGI
KTKDDDANTTPNWETRPAQMDSIVPEINEPTSDVWGLKSVSEKPWNKKNWGTESAPAAWG
STDADAWGSSNKKNSETESDAAAWGSRDKRNSDIGSGAGVLGPWNKKSSETESDAAAWGS
SGKTKSDAATWSPWDKNNMEPDSEPAGWGSQGNMKSETETESNGASWGSSGKTKSGAAAW
GSCDKNNMETNSEPSAWGSQGKKKAETESGPASWGAWDKKISETESGLAGWGNGDKINSE
TESGAAAWGSWGQPSPTAADKDTNEDDGNPWVSLKETKSGEKDEKEKSQWGNPAKKFPSD
GSYGGWSNGGGAEWRGKRNHTPRPPRSEDNLAPMFTATKQRLDSFTSEEQELLSDVEPVM
RTLRKIMHMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLGSAVDFITVDKHTTFTDTR
CFFVVSTDGAKQDFSYRKSLNNYLMTKYPDRAEEFIDKYFKKPRPSGNRDRNNQDATPPG
EEQSQPLTQSIGNGSEEDFQTQTQSQSPNQTQTQSPSQTQAPSQTQSPSQTQSPPQSQSP
AQTQSQSPSQTQSPPQTQSPAQTQSQSPSQTQSPPQTQS
NT seq 5880 nt   +upstreamnt  +downstreamnt
atggaggaagcatcttcatcagaagttccagaaggcgagattgtaggaatcacgtttgct
cttgcaagtcaccacgaaatttgtatagcatctattagtgaatcctcaatcaaccatgcc
agtcaactctctaacccattcttggggttacctcttgagtttggcaaatgtgaatcttgc
ggtgcgacagaaccagataagtgtgaaggtcattttgggtatattcagcttccagtgcca
atataccatcctgcacatgttatcgagctgaaacaaatgctgagccttctgtgcttgaaa
tgtctgaagataaagaaggcaaagagcacaagcggtggtcttgcggagcgcttattaggt
gtttgttgtgaggaagcttcgcacatctcaatcagagacagagcatcagatggtgcctca
tatctagaactaaagtttccatctaggtcaagactgcaggcgggttgctggaatttcctg
gaaagatatggttaccgctatggaagtgattatactcggcccctgcttgcaagagaggta
aaggaaattctaagacggatccccgaagaaacaagaaagaaactcgcagcaaaaggacat
attcctcaagaaggatacatattagaatatctcccagtcccgcctaactgtttgtctgtg
ccagatatttctgatggtttaagctccatgtcagtggatccttccagaatcgagctgaaa
gacgttctaaagagagtggtagccataaaaacctctagatctggcgagacaaactttgag
tcgcataaggctgaagccaacgacatgtacagagtggttgacacctatctgcaggtgagg
ggtactgcgaaagcagcaagaaccatggatatgagatacagggtatctaagatctcagat
agttcatcctcaaaagcctggacagagaaaatgagaacacttttcatccgcaagggttca
ggtttctcttcccgtagcgttatcactggtgatgcttaccgacatgtgaatgaggtaggg
atcccaattgaaattgcgcagagaatcacattcgaggacagggttagtgtccacaacata
cgttatctacaagagttggtagacaagaagttgtgtttgagctatactcaaggttctaca
acctattctttaagagatggatccaaggggcacactgagcttaaacccgggcaggttgtt
catcgcagggtcatggatggggatgttgtgtttatcaaccgacccccgacaacacataag
cattctcttcaagcgcttcgggtgtatgttcatgaagacaacaccgtgaagattaaccct
ctgatgtgtagccccctcagtgctgattttgatggtgattgtgtccatctgttctaccca
cagtcacttagtgctaaggcagaggttatggagctcttctctgtggacaagcaactgctt
agctcacatactggacagctgattttgcagatgggttgtgattctttactttctttgagg
gttatgctggagcgggtgtttctggacaaggcaactgctcaacagctagctatgtatggc
tctctgtctctgccaccaccagcactaaggaagtccagtaaatctggcccagcttggaca
gtgttccagattctacagcttgcctttcctgaacgtctgagctgcaaaggggacagattc
atggttgatggaagtgatttgctgaggtttgatttcggggttgacgttatggcatccatc
atcagtgaaattgtaacttcaatcttcctggagaagggtccaaaagaggcacttggattt
tttgattcactgcagcctctattgatggaaagtctattcgctgagggctttagtttaagt
ttggaagacttatctatgtctagggcagacatggctgttattcacaacctaataatccgg
gagacttcacctatggtgtctcgcttgagattatcatatgaggatgagttgcaactagag
aacagtatccacaaagtgaaggaagtggctgctaactttatgctgaagtcatattccatg
cggaacttgattgacatgaagagtaactcagcaataaacaagctggtgcagcagacaggc
ttcttgggtcttcagctttctgacaagaagaagttctacacgaagactctggtagaggac
atggctctcttttgcaagagaaagtatggcaggatttcttcatctggtgattttggaata
gtgaagggctgcttctttcacgggctggatccgtatgaagagatggctcattcaattgca
gctagggaggtaattgttcgctcttcaagggggttagctgagcctggaactctctttaag
aatctgatggctgttcttcgggatatcgtgattacaaacgatggaactgtaagaaacacc
tgtagtaactcagtcgtccagttcaaatatggagttgattctgaacgtggacatcaaggt
ctgtttgaagcaggagaacctgttggagtattggcagctactgccatgtcaaatcctgcg
tataaggcagtgcttgattccactgcaaatagtaattcatcatgggagctaatgaaggaa
gttttgctctgcaaagtcaatttccaaaacaatactaatgatcggcgtgtaatcctttat
ttaaatgaatgccgttgtggaaaaaggttttgccaggaaaatgctgcttgcacagtcagg
aacaagctgaataaagttagtcttaaagctactgcagtggaattcctagttgaatacaga
aagcaacaaactatatcagaaatttttggaattgattcatgcctacatggccatattcat
cttaataagacattgctgcaagattggaacatcagtatgcaggacatacatcaaaagtgt
gaggatgtaattaattcactaggacaaaagaaaaagaagaaagctactgacgacttcaag
agaacaagtttgtctgtcagtgactgctgctctttccgagatccttgtggaagcaaagat
tcagatatgccttgtttgatgttctcctacaatgccaccaatcctgatctagaaagaact
cttgatgttctttgcaatacaatttacccggttctgctggaaacagtgatcaaaggtgat
ccacggatttgttcagcaaatataatctggaatagttcagacatgacgacctggatccgg
aatcgtcatgcatcccgccgaggggaatgggttttggatgtcactgttgaaaagtctgct
gtaaagcaaagtggtgatgcatggagggttgtgatagactcatgtctttcagtgcttcat
ctaatagacacaaaacggtcaatcccttattctataaagcaagtgcaagaattgcttggg
ttatcctgtgcttttgagcaagcagtacagcgtctatcagcttcagtgaaaatggtctcc
aaaggagttttgaaagaacacatcattctcctagcaaataatatgacttgttcagggaat
atgttgggtttcaattctggaggttacaaagctttgacccgatccttaaacatcaaggct
ccatttacagaagcaactctgattacaccaagaaaatgttttgagaaagcggctgagaaa
tgtcatacagattctctatcaacagtcgttgggtcttgttcctggggaaaacgcgtggat
gttggtacaggttcacagtttgaactcctttggaaccaaaaagagactggcctagatgat
aaagaagaaacagatgtgtacagcttcctccaaatggtcagatccacgaccagttcagat
gcatttgtttcttcacctggttttgatgttacagaggaagaaatggctgaatgggctgaa
tcgcctgagcgggactctgctctcggagagcccaagtttgaggacagtgccgagttccaa
aatttacatgacgatggcaagcaatcagaatccaactgggagaaaagctcttcgtgggac
aatggttgcagtggtggctcagaatggggagtctcaaaaagtactggtggtgagtcaaac
acggagtctaattgggaaaagactacaagtgttgagaaggaagatgcttggtctggttgg
aacactaaaaaggatgctcaagaatcttccaagtcagattcaggaggtgcttggggcata
aagaccaaggatgatgatgcaaatacaacaccaaactgggaaacaagaccagctcagatg
gattctattgtcccagaaattaatgagccgacttctgacgtttggggactcaaatctgtt
tccgaaaaaccttggaacaaaaagaactggggaactgaatcagctccggctgcatggggt
tctacagatgctgatgcttggggttctagtaacaaaaagaactcggaaactgaatcagat
gctgctgcttggggttctagggacaaaaggaattctgacataggctcaggtgctggtgtt
ttgggtccctggaacaaaaagagctcagaaactgagtcagatgctgctgcttggggttct
agtggcaaaactaaatcagatgctgctacatggagtccttgggacaaaaataacatggaa
cctgactcggaacctgctggttggggttctcagggcaatatgaaatctgaaacagaaact
gagtcaaatggtgcttcttggggttccagtggtaaaactaaatcaggtgctgctgcatgg
ggttcttgcgacaaaaataacatggaaactaactcggaaccttctgcttggggttctcag
ggcaaaaagaaagctgaaactgagtcaggtcctgcttcttggggtgcttgggacaaaaag
atatcagaaactgaatcaggtcttgctggttggggtaacggggacaaaataaattctgag
actgaatcaggtgctgctgcttggggttcttggggacagccaagtcccactgcagcagac
aaggataccaatgaagatgatggaaatccgtgggtttccttaaaggagaccaaaagtgga
gagaaggatgaaaaagagaaaagccagtggggaaatccagccaagaaatttccatctgat
ggctcatatggtggctggtccaatggtggtggtgcagagtggagaggaaagaggaaccat
actcctaggccacctagatctgaggataatttggctcccatgtttacagcaacgaaacag
cgcttggactcattcacctctgaagagcaagagcttctctcagatgttgagccagtcatg
aggactcttaggaaaataatgcatatgtccgggtaccctgatggagaaccaatttctgat
gatgataagacgtttgttctggagaagattttgaacttccatcctgaaaaagagagaaag
cttggttctgctgttgatttcatcacggttgataagcacaccacattcacagacaccagg
tgcttctttgtcgtttcaacggatggggccaaacaagacttttcatacagaaaatcgctc
aataactatttgatgacgaaataccccgaccgtgctgaagaattcattgacaagtacttt
aagaaacctcggcctagcggaaacagagacaggaacaaccaagatgccacaccacctggg
gaagaacagtctcagcctctgactcagtctataggtaatggaagtgaagaagacttccag
actcagactcagtctcagtctccaaatcagactcagactcagtctccatctcagactcag
gctccatctcagactcagtctccgtctcagactcaatctccaccccagtctcaatctccg
gctcagactcagtctcagtctccatctcagactcaatctccaccccagactcagtccccg
gctcagactcagtctcagtctccatctcagactcaatccccaccccagactcagtcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system