KEGG   Capsella rubella (pink shepherd's-purse): 17892652
Entry
17892652          CDS       T02984                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    17892652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crb03021]
    17892652
Enzymes [BR:crb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     17892652
Transcription machinery [BR:crb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     17892652
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP77 SPK
Other DBs
NCBI-GeneID: 17892652
NCBI-ProteinID: XP_023641577
Position
Unknown
AA seq 1171 aa
MDIDDMDIEEIEAAGQINPSDLGQNFLQSFCKKAATSFFDKYGLISHQLNSYNFFIEHGL
QNVFDSFGEMLVEPSFDPTKKKENGWKYASVKFGQVTLEKPKFFSDDKELEFLPWHARLQ
NMTYSARIKVNVHVEVFTKTVVKSDKFKTGQDEYVEKKDLDVKKQDILIGSIPVMVKSIL
CKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISFTNSPWTVSFRSE
NKRNRFIVRLAENQKLEEYRRREKVLTVYFLSTEIPVWVLFFALGVSSDKEAMDLIAFDG
DDASITNSLIASIHEADAVKEGFRHGNNALAFVEKQIKDTKFPPAESVDDILRLYLFPGL
QSLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRMELAGELLEREIRVHLAHARRNM
TKAMQKHLAGEGVLKPIEHYLDASIITNGLNRAFSTGQWSHPFRKMERVSGVVANLGRAN
PLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVST
QILEPVMEKFLDCGMEELMDDTSTPLCGKQKVLLNGDWVGLCSNPKSFVAELKSVRRQND
LLRQMEIKRDKDDNEVRIFTDAGRLLRPLLVVKNLHKLKQDKPTQYPFEHLLDQGILELI
GIEEEEDCNTAWGIPYLLKEPNNYTHCELDLSFLLGVSCAIVPFANHDHGRRVLYQSQKH
CQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGY
NQEDSIVMNKASLERGMFRSEQIRSYKSEVDSKDSEKRKKMDELVQFGKIHSKIGRVDSL
DDDGFPYIGANLSTGDIVIGRCTESGADHSVKLKHTEKGFVQKVVLSSNDDGKNFAAVSL
RQVRSPCLGDKFSSMHGQKGVLGYIEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLE
AALSKGIACPIQKKEGSSAAYTKVTRHATPFSTPSISEITEQLHRAGFSRWGNERVYNGR
SGEMMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD
CLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCESPDH
VVRVYVPYGAKLLCQELFSMGITLNFDTKLC
NT seq 3516 nt   +upstreamnt  +downstreamnt
atggatattgatgacatggatattgaagagattgaggctgctgggcagatcaatccttct
gacctaggacaaaattttctccagagtttctgcaaaaaagctgcaacatccttctttgac
aagtatggacttataagtcatcagctcaactcctacaacttctttattgaacacgggctt
cagaatgtgtttgattcctttggtgagatgctcgtggaaccatcttttgatccaactaag
aagaaagaaaatggttggaaatacgcatctgtaaaattcggacaagtcacactggagaag
cccaaattcttttcagatgacaaggagcttgagtttctcccatggcatgccaggcttcag
aacatgacatactcggcaaggatcaaagtgaatgtccacgttgaggtgttcacaaaaact
gttgttaaaagtgacaaattcaagactggacaagatgaatatgtcgagaagaaggatcta
gatgtcaaaaagcaggacattctaattggtagtatacctgtcatggtgaaatctatcctt
tgcaaaactagcgagaaaggaaaggaaaactgcaaaaagggggattgtgcctttgatcag
ggtggatattttgttataaagggggctgagaaggtgtttatagctcaagaacagatgtgc
acaaagagactgtggatttccttcaccaattcaccatggacagtctccttcaggtctgaa
aataaaaggaatagattcattgtgcgcctggcggagaatcagaaattagaagagtatagg
agaagggagaaagtactaacagtgtacttcttgtcgactgagattccagtctgggtcctc
ttctttgcgctgggtgtttcatcagataaagaagccatggatctaattgcttttgatgga
gatgatgcaagcattaccaatagtctcatagcttctatccatgaagctgatgcagtcaaa
gaaggttttcgccatgggaataatgctctagcatttgttgaaaagcagattaaagacacc
aaattccctcctgctgaaagtgtggatgacatcctccgcctgtatttgtttccaggcctc
cagagtttgaagaaaaaagcccgattccttggctatatggtgaagtgtcttctgagtgca
tatgctgggaaaagaaaatgtgaaaatagggacagtttcaggaacaagcgaatggaactt
gctggagaactgttggaaagggagataagagtgcatctggcacatgctagaagaaacatg
accaaggccatgcagaaacaccttgcaggcgagggtgttttgaagcctattgagcattat
ttggatgcatccataatcacaaatgggcttaatagagccttctccactggacaatggtct
caccctttcaggaagatggaaagggtttcaggtgttgtagctaacctgggtcgcgcaaat
ccattgcaaactctgattgatctgaggagaacccggcagcaagttctttatactggcaag
gttggagacgccagatatccgcatccctctcactggggcagagtatgctttttgtcaact
ccagatggtgaaaattgtggtcttgtgaagaacatgtctcttctaggacttgttagcact
caaattttggagcctgtgatggaaaagttcttagattgtggaatggaagagctgatggat
gatactagcacaccattgtgtggcaaacagaaagttcttctcaatggagattgggtagga
ttatgttcaaatcctaaatcctttgtggcggagttaaaaagtgtgcggcgccaaaatgat
ttacttcgtcagatggaaatcaagcgagataaagatgacaatgaggtgagaatcttcact
gatgctggtagactactccgacctctcttggttgtgaaaaatctccacaagttgaagcaa
gacaaaccaacacagtatccttttgagcatcttcttgaccaagggatcctcgaactgatt
gggattgaggaagaagaagactgtaatacagcatggggaatcccttatcttctgaaggaa
ccaaataattacacgcattgcgaactggacctctcattcttgttgggtgtgagctgtgca
attgtcccatttgcaaatcacgatcatgggagaagagttctctaccagtcccagaagcat
tgccaacaagccattgggttctcatcaacaaaccctaacattcgctgcgatactctgtcc
cagcaactattctatccccagaagccacttttcaagacattggcgtcggagtgtcttaaa
aaagaagtgctgtttaatggccagaacgcaattgttgctgtgaatgttcatctcgggtac
aaccaagaggattccattgtgatgaacaaggcttcactggaacgtggtatgttccgttca
gagcagattagaagctacaagtcagaggttgatagcaaagactcggagaagaggaagaag
atggatgagcttgttcagtttggaaagatacacagcaaaatcggcagagtagacagcctt
gatgatgacgggttcccttacattggtgctaacttgagtactggcgatattgtcattggc
agatgcaccgagtctggggctgatcacagtgtaaagctcaagcacactgagaaaggattt
gtgcaaaaagtggtattatcatccaatgacgatgggaagaattttgctgcagtttctctg
agacaggttcgttctccatgccttggagataagttttccagtatgcatggccagaagggt
gtgttaggctatatagaggaacagcagaattttcctttcactatccaaggcatagttcct
gatattgtgataaacccgcacgctttcccttctaggcaaacaccgggtcaactcttggag
gctgctctctccaaaggaatagcgtgtcctatacaaaagaaggagggtagctctgcagca
tacaccaaagtgactcgtcatgccactcctttctccactccgagtatctctgaaatcaca
gagcagcttcacagggctggattttcaagatggggaaacgaaagggtctacaacggtaga
tcaggggagatgatgcgatctctgatattcatgggcccaactttctatcagcgacttgtc
cacatgtcagaggacaaagtgaaattcagaaacactggaccagtccacccgctcacacgg
cagccagtggcagacaggaagaggtttggtgggataaagtttggagaaatggagcgagac
tgcctaatagctcacggtgcatctgctaatctgcacgagcgtctcttcaccctcagtgac
tcttctcagatgcacatctgcaggaaatgtaagacctatgcgaatgtgatcgagaggact
ccaagcagtggaagaaagatcagagggccatattgtagagtctgcgaatccccagaccat
gtggtaagggtttatgttccttatggagctaagcttctgtgtcaggagctgttcagcatg
ggaatcactctcaacttcgacaccaagctctgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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