KEGG   Capsella rubella (pink shepherd's-purse): 17893549
Entry
17893549          CDS       T02984                                 
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    17893549
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crb03019]
    17893549
Messenger RNA biogenesis [BR:crb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     17893549
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     17893549
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40
Other DBs
NCBI-GeneID: 17893549
NCBI-ProteinID: XP_023642515
Position
Unknown
AA seq 1357 aa
MASSPGNTNPHNPPPFDLGILFKPSSNPYPAPPASYPPPTGPFLHNQYDQQHYALPAISA
QPSPVTQAQQDVSSSSLATNLHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNNNNGGA
VANQEPSHQPPLVNHNEIARSFPGGSGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQ
PQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVT
DMAFFAEDVDMLASVSLDGKVFVWKISEGSEGDDQPQITGKIVCALQILGEQDTKHPRVC
WHCHKQEILVVSIGRHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTD
LSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILI
TGGPLNREMKIWVSAGEEGWLLPADSESWRCTQTLALKSSTESRAEEAFFNQVIALSEAG
LLLLANAKRNALYAVHLDYGNSPVETRMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYCV
QTLAIQQYTLDLSLCLPPPVENMGLEKSDSNVSREANLVESTSEPSGLKPTDLPSVDSVP
KPSIIVNRSESANKLSFTSAEATAQAIVPPNGEPKTSALPSETSGAGSAYATSPKLPLSP
RLSRKLSGYHSPVDAIEPVTPHHELGGRAPSADYSVDRQMDAVGVSSCDVSSIEENSRSK
DPNVTPDDDLSGMRSPAAFFKHPTHLVTPSEILMGVSSAEASTTNEDRRDRDANNFQDVN
NDARGAEVEVKEVSDTRSTQNGETNDNDETANRTSENREKVFCSQVSNLSTQMARDCYPS
TEGTFIPGESKAYGEPIQAGDESGLDTRGVSAKLPESGSSSGLQQSSAANSKGKKQKAKN
SQGPSLSSSSSNLAESFNEQRESLSHPMTDPLPQFLAMQEXMNQIMASQKEMQRQLSNAV
TGPIVKESKRLEVALGRMIEKSSKSNADALWARFQEETAKNEKALRDHSQQIVSATTNFM
SKELNAMFEKTIKKELAAIGPALARSVTPVIEKTVSSAITESFQRGIGDKAVNQLEKSVN
LKLEATIARQIQAQFQTSGRQALQEALRSGLESSVIPSFERACKTMFDQMDSAFQKGIAE
HTNAAQQRLDSGHSQLAHTLRETITSASSVAQALSRELAENQRNFLALAAAGANSGGSNP
LITQLSGGPLGALLEKAEAPKDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVD
LRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLGWMTDVVAAINPSDQMIAVHARPI
FEQVYQILHHHRNAPGSDVSAIRLIMHVINSMLMGCK
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcgtcttctcctggtaataccaatcctcacaatcctcctccgtttgatctcggtatt
ctcttcaaaccttcatccaatccttacccggcgccgcccgcatcttatcctccccccaca
ggtccatttcttcacaaccagtacgatcagcagcactacgctctgcctgctatatccgct
cagccatcgccggtcactcaggcgcaacaggatgtctcttcctcttccttggcgactaac
ttgcacccacagagaacgctctcttatcccacgccacctctcaatctccaatctccccgt
tccaatcacaatcctggaacgcacatcctcgctctcctcaacaacaacaacggaggcgcc
gtggctaaccaagagccatcccatcaacccccgttagtgaatcacaacgagatcgcgcgt
tctttccccggtggttcgggtcctattcgtgtcccgagctgtaagcttcccaaaggaagg
cgattgattggtgaacacgccgtgtacgatgtagatgtgagattacaaggggagattcag
ccacagctggaggtgactccgattaccaaatacggttcggatcctcagctagttgtgggt
cggcaaatcgcagtgaataaggtctatatatgctatggattgaaaggaggaaacattagg
gttctcaatataaacacagcattaagatctctgttccggggccattctcagagagtgacg
gatatggctttctttgccgaggatgttgatatgttggccagtgttagtctagatggaaaa
gttttcgtgtggaaaatttctgaaggatctgagggagatgatcaaccccagataactgga
aagatagtttgtgctctacagattctaggagagcaagacaccaaacatccacgtgtttgt
tggcactgccacaaacaggaaattttggtagtttctattggtagacatgtgctgcgaatt
gatactacaaaagttggcagaggtgaagtattctctgctgaggcacctctccagtgtccc
cttgataagctgattgatggtgtccagattgtgggtaaacatgatggagaagttacagat
ttgtcaatgtgccaatggatgaccacgcgcctggtttcttcttctgttgatggcacgatt
aagatatggcaagatcgtaaagcacaaccacttgtagttttgaggcctcatgatggacat
ccagtcagttcagccacgtttgtgacatctcctgagagacctgatcacatcatacttatc
acagggggtcctctcaatcgagaaatgaaaatctgggtctctgctggagaagaagggtgg
cttctaccagctgattctgaatcatggaggtgtactcagacacttgccttgaaaagttca
actgagtcacgggctgaagaggcattttttaatcaagtcatagcattatctgaagcaggc
ttgcttttacttgcaaacgcaaaaaggaacgccttatatgctgtgcatttggactatggt
aactcccctgttgaaacgcggatggattacctgtcagagtttacagtcactatgcccata
ttgagttttattgggacaaatgatcctccagaagagcccattgttaaggtttattgtgtt
cagactctagcaattcagcagtatacattagacttgagcttgtgcttgccaccacctgta
gagaatatgggtttggagaagtcagattctaatgtatcgcgagaggcaaaccttgttgaa
agcacgtcagaaccatctggactgaaacctacagacttaccttcagttgattcagtgcca
aaaccttctattatagtgaatagatcggaaagtgctaataagttgagttttacatccgcc
gaagccacagcacaagcaattgttccacccaacggtgaaccaaaaacttctgccttgcca
tctgagaccagtggtgcaggttctgcgtatgctacgtcacccaaacttcctctaagtccc
agactatcaagaaaactttctggctatcacagtcctgtagatgctattgagccagtaaca
cctcatcatgagcttggtggcagagcaccttcggctgactattctgttgataggcaaatg
gatgctgttggagtaagtagttgtgatgtgtcatccatagaagaaaattcaagaagcaag
gacccaaatgttacacctgatgatgatttgtccgggatgcgaagcccagcagcctttttc
aaacaccccactcatcttgtaactccttcagagatattgatgggcgtttcgtctgctgaa
gcctccaccaccaatgaagacaggagagatagagatgcaaataattttcaggacgtgaat
aatgatgcaagaggtgcagaagttgaggtgaaagaagtaagtgacacaaggtcaacacag
aatggtgaaaccaatgataatgatgaaactgcgaatcgcacttcagaaaatagagaaaaa
gtcttctgctcacaggtttcaaatctcagcacccagatggcaagagactgttatcctagt
acagaaggaactttcataccaggggaatctaaggcttatggagaacctatacaggctgga
gatgaaagtggtcttgacacgagaggtgtgtctgcaaagcttcctgagtcgggttcatct
agtgggcttcaacagtcgtcagctgcaaatagcaaagggaagaagcagaaggccaaaaat
tcacagggtcccagtctgtcatcttcatcctcaaatctggctgaatccttcaatgagcaa
cgtgagagcttaagtcatcccatgacagatccacttcctcagttcctagctatgcaagaa
nncatgaatcagataatggcttcgcagaaggagatgcagagacaactatcaaatgctgtc
actggccctatcgtaaaggaaagtaaaagactagaagtggcgttagggagaatgattgag
aaatccagcaagtcaaatgctgatgctctatgggctcgcttccaagaggagactgctaag
aatgaaaaggcattgcgtgaccattcacagcaaattgtgagtgcaacaacaaacttcatg
agcaaggagttaaatgccatgtttgagaaaacgataaagaaggaacttgctgcaattggt
ccagcccttgcacgttcagttacaccggttattgaaaaaactgtatcttctgcaatcaca
gagtccttccagagaggaattggtgacaaagcagttaatcagcttgaaaaatctgttaat
ttaaagcttgaagcaacaatagctaggcaaattcaagcccaatttcagacctctggcagg
caagccctccaggaagcgcttaggtcgggtctagagtcctcagtcataccttcttttgag
agggcatgcaagacaatgtttgatcaaatggactcagctttccagaaagggattgctgag
catacaaatgcagcccagcaacgccttgactctggacactcccagcttgctcatacttta
agggaaacaattacttctgcatcatcagttgctcaagccttaagtcgtgaattagccgag
aaccaaaggaatttcctagctctcgcagctgctggagcaaattctggcgggtcaaatccc
ttgattactcaactaagtggcggacctttgggtgctcttcttgaaaaggctgaagcacct
aaggacccaacaactgaactttcaaggttgatatctgaacgcaagtacgaagaatctttc
acttctgctctacagagaagcgatgtctctatagtatcatggctttgttctcaggtggat
cttcgtggactattggctatgaatccacttccgctgagtcaaggcgtgcttctttcgctg
ctgcagcagctagcctgcgacataagcaaggacacatctcgtaagcttggttggatgact
gatgtggtggcagccataaacccatcagatcagatgattgcagttcacgctcgcccaatc
tttgaacaggtctatcagattctgcaccatcaccgaaacgcaccggggagcgatgtctca
gccatcagactgataatgcacgtcataaactccatgctgatgggctgcaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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