KEGG   Capsella rubella (pink shepherd's-purse): 17897419
Entry
17897419          CDS       T02984                                 
Name
(RefSeq) chaperonin 60 subunit beta 4, chloroplastic isoform X1
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    17897419
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crb03019]
    17897419
   03110 Chaperones and folding catalysts [BR:crb03110]
    17897419
   03029 Mitochondrial biogenesis [BR:crb03029]
    17897419
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:crb04147]
    17897419
Enzymes [BR:crb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     17897419
Messenger RNA biogenesis [BR:crb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     17897419
Chaperones and folding catalysts [BR:crb03110]
 Heat shock proteins
  HSP60 / Chaperonin
   17897419
Mitochondrial biogenesis [BR:crb03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    17897419
Exosome [BR:crb04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   17897419
  Exosomal proteins of other body fluids (saliva and urine)
   17897419
  Exosomal proteins of breast cancer cells
   17897419
  Exosomal proteins of colorectal cancer cells
   17897419
  Exosomal proteins of bladder cancer cells
   17897419
SSDB
Motif
Pfam: Cpn60_TCP1 Spike_torovirin
Other DBs
NCBI-GeneID: 17897419
NCBI-ProteinID: XP_023644592
Position
Unknown
AA seq 610 aa
MASSQAALSALPLADRTFRKKPSSSSSSSNFVLRARAAAKEVHFNRDGSVTKKLQAGADM
VAKLLGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTN
DLAGDGSTTSIILAHGLITEGIKVVSAGINPIQVARGIEKTAKALVLELKSMSREIEDHE
LADVAAVSAGNDYEVGNMIFNAFQKVGRAGVVTIEKGRYLVNNLEIVEGMQFNRGYLSQY
FVTDRRKREAEFHDCKLLLVDKKITNPKDMFKILDSAVKEEFPVLIVAEDIEQDALAPVI
RNKLKGNLKVAAIKAPAFGERKSHCLDDLAIFTGATVIRDEMGLSLEKAGKEVLGTAKRV
LVTKDSTLIVTNGATQKAVEERVTQIKNLIQNTEENFQKKILNERVARLSGGIAIIQVGA
QTQVELKDKQLKVEDALNATKSAIEEGIVVGGGCALLRLATKVDRIKDTLDNTEQKIGAD
IFKKALSYPIRLIAKNAGTNGNIVIEKVLSNKNTMYGYNAAKNQYEDLMLAGIIDPTKVV
RCCLEHAASVAQTFLTSDCVVVEIKEIKPRPIINPPLPTSPPATSSMFPDRKLPRFPQIM
PRTRSHFPRK
NT seq 1833 nt   +upstreamnt  +downstreamnt
atggcttcctcacaggctgcactctctgcgttgcctcttgctgatcgaactttccggaaa
aagccttcttcttcttcttcttcttcgaattttgtccttagagcaagagctgctgcaaaa
gaagttcactttaaccgtgatggctctgtcaccaagaagcttcaggcaggtgcagatatg
gtggctaagctattgggcgtgacattgggtccaaagggacgaaacgtggtgttgcagaac
aagtacggacctcccaagatcgtcaatgacggtgaaaccgttctcaaagagattgaattg
gaggaccctttagagaatgttggagtgaaacttgtgaggcaagcgggtgccaagacaaat
gaccttgcgggtgatggttccactacatctattattcttgctcatggccttattactgaa
ggtattaaggtggtttctgctggaataaatcctattcaagttgcccgtggtattgagaaa
accgctaaagctcttgttttagagcttaagtcaatgtccagagagattgaagatcatgag
cttgctgatgttgcagcagtaagtgcggggaatgattacgaagttggaaacatgattttc
aatgcttttcaaaaagtagggagggctggtgtagtaacaatagagaaaggaagatacctc
gtgaacaatcttgagattgtggaaggaatgcagtttaatcgtggttatttatcgcaatat
tttgttactgatcgaaggaagagggaagctgaattccatgattgcaagctgcttttggtt
gataagaaaataacaaatccaaaagatatgttcaagatattggattctgctgtgaaagag
gaatttccagtccttatagttgccgaagatatcgaacaagacgctcttgctcctgttatt
aggaacaaactaaaaggtaacttgaaggtggcagccattaaggctcctgcctttggagag
cgcaagagtcactgcttggatgatcttgcaatctttactggagctaccgtgatcagagat
gagatgggactgagcctagaaaaggctggaaaggaggtcttaggaacagcaaaaagggtt
cttgttactaaggattcaacactgattgttacaaatggagccacccagaaagcagtcgaa
gaaagggttactcagattaaaaatcttatccagaacaccgaggagaattttcagaagaag
atcctcaatgaaagagtagccagattatctggtggaattgctataatccaggtaggtgca
cagacacaagttgagttgaaggataaacagctaaaggttgaagatgccctgaatgcaacc
aagtcagcaattgaagaagggattgtagttggtggcggttgcgccctcttgcgactggct
acaaaagtggacagaatcaaagacacccttgacaacacagaacagaagattggagctgac
atattcaagaaagcactgagctaccccataagactcatagccaaaaacgcaggcacaaat
ggaaacatcgtcatagaaaaggtcttatcaaacaaaaacactatgtacggttacaatgct
gcaaagaatcaatatgaagatctgatgttggctggtataatcgatccaaccaaggttgtg
agatgttgcttggaacacgctgcatcagtggctcaaacctttcttacatcggattgtgtt
gtagttgagataaaagaaatcaaacccagaccaatcattaatccaccactgcctacttct
cctccagctacctcctccatgttccctgacagaaagctgccaagatttcctcaaatcatg
ccaagaactcgaagccactttccaaggaagtag

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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