KEGG   Capsella rubella (pink shepherd's-purse): 17900129
Entry
17900129          CDS       T02984                                 
Name
(RefSeq) probable pectate lyase 1
  KO
K01728  pectate lyase [EC:4.2.2.2]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb00040  Pentose and glucuronate interconversions
crb01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:crb00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    17900129
Enzymes [BR:crb01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.2  Acting on polysaccharides
    4.2.2.2  pectate lyase
     17900129
SSDB
Motif
Pfam: Pectate_lyase_4 Beta_helix
Other DBs
NCBI-GeneID: 17900129
NCBI-ProteinID: XP_006307575
UniProt: R0ISX7
Position
Unknown
AA seq 431 aa
MAVLPTWVLAMLCLLFVVGAMDNTTHDKISSLPRSDDSEWNQHAVTNPDEVADEVLAMTE
MSARNHTERRKLGYFTCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFQRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQYVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYMRDKAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGA
LPCRRGRQCSS
NT seq 1296 nt   +upstreamnt  +downstreamnt
atggcggttcttcccacatgggttttagcaatgttgtgtctactctttgtcgtcggagca
atggacaacactacgcacgacaagatctcatctctccctagatccgacgacagcgagtgg
aaccaacacgcagtgacgaatccagatgaagtcgctgacgaagttctcgccatgactgaa
atgagtgcgagaaaccataccgagaggaggaaactgggttactttacttgcggtacaggc
aaccctatcgacgactgttggcggtgcgaccgcaactggcacaagaaccgcaaacgctta
gcggactgcgggatcggatttggaagaaacgccattggtggtcgcgacgggcgtttctac
gttgtcactgacccaagagacgacaatccggttaatcctagaccggggactttacgtcac
gccgtgatccaagaccgaccgttatggatcgttttccaacgcgatatggtgatccagttg
aaacaagagctcatcgttaacagcttcaaaacgatcgatggacgaggcgcaaacgtccac
atcgctaacggcggttgcatcacgattcagtatgtaacgaacgtgatcgtccacggattg
catattcatgattgtaaacccactggtaacgctatggtgagaagctctgagacccatttt
gggtggaggaccatggcggatggtgatgctatttcgatctttggctcgagtcatgtatgg
attgatcacaactctttgtctcattgcgctgacgggcttgtcgacgcagtcatgggctca
accgcgatcaccatctctaacaaccacttaactcaccacaacgaggtcatgttgctcgga
cacagcgattcgtacatgagggacaaagctatgcaagtgaccattgcttataatcatttt
ggagtcggacttattcaaagaatgccgaggtgtcgacacgggtacttccacgtcgtgaac
aacgactacactcactgggaaatgtacgccattggtggaagcgcaaacccgacaatcaac
agtcaaggaaaccgctacgccgccccgaaaaacccttttgccaaagaggtgacaaagaga
gtggacacaccggctagtcattggaaaggatggaactggagatcggaaggagatttgctt
cagaatggtgcttatttcacttcttcaggagctgccgcgtccggaagttacgcacgtgcc
tctagtctctccgcgaaatcttcttcattggtcggacacattacttccgacgccggagct
ctaccttgtcgcagaggacgtcaatgttcatcatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (2)   
   KEGG COMPOUND (2)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system