KEGG   Chlamydomonas reinhardtii: ChreCp042
Entry
ChreCp042         CDS       T01039                                 
Symbol
rpoB-1
Name
(RefSeq) RNA polymerase beta subunit I
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cre  Chlamydomonas reinhardtii
Pathway
cre03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ChreCp042 (rpoB-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cre03021]
    ChreCp042 (rpoB-1)
   03400 DNA repair and recombination proteins [BR:cre03400]
    ChreCp042 (rpoB-1)
Enzymes [BR:cre01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ChreCp042 (rpoB-1)
Transcription machinery [BR:cre03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ChreCp042 (rpoB-1)
DNA repair and recombination proteins [BR:cre03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ChreCp042 (rpoB-1)
SSDB
Motif
Pfam: RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 ATP11
Other DBs
NCBI-GeneID: 2716993
NCBI-ProteinID: NP_958398
UniProt: Q8HTL6 A0A218N995
Position
CP
AA seq 822 aa
MLNISTNMMINQTLNFDSNQESQKNKTERISKTKLTRELITKTDHDIYVDDISFLQREDN
VNVSQIDLTARGVLNPEDQGVLHKSTEFGVFNKNKTGLPASVDLKIKQNSFFSVKQPDFN
KYLISDFVEIQRNSFFTLLEKGIIEEFSKRNPITNSKKTMEIFFYPDYYQLTPPEYSPSQ
AIIKSKSYTSKLYIPVQLTDKSKNIIKLKWVYIGDIPLMTKRGHFILNGCARVIVNQMVR
SPGIYYQKKIYENFSNKWSEKPENTFTRYFADLICNRGTWLRIEMDKYNKIWAQMKRVPK
IPIMWFLIAVGLTDKIVLKTVMDSKILLYNLDEDPLNPRKKPLPYVKTPPAAWSAIYNIV
FAKKIKAQEKAKKMLELTEGNPSSKSQTKNKTSASKKSKTLNVANTKGKTPAENIKTLSE
LIDLEKALFLKSEQGRKWIFNKFMNPRTYDLGKVGRVNFNRKLKLSISQDITTLTPQDLL
AATNNLILVSKGLRELDDIDHLKNRRVRTSGELIQIQIGVGLVRLEKTIREKMTYASGLS
SLPSQKFAFRSSKQRNQSPVGDAENATQLTIGNLINTKPFNGALREFFGTSPLSQFMDQI
NPLAELTHKRRLSSMGPGGVTRDSATLAIRGIHPSHYGRICPVETPEGKNTGLVNSLTAY
ARVNAAGYIETPFYRVYKGQVQKKTGLYFFSAKQEEKIKLGAPDLYTSEIGFLPKASIPV
RIVEDFTKISRNEIQYVGVAPIQMISIATSLIPFFEHDDANRALMGSNMQRQAVPILKPQ
RPIVGTGLEARAVSDSGHVITAKSSGIVMYTSSKEIIIYSLQ
NT seq 2469 nt   +upstreamnt  +downstreamnt
atgttaaatatttcaacaaatatgatgataaatcaaactctaaatttcgattctaaccaa
gaatcacaaaaaaataaaacagaacgtatatctaaaacaaaattaactcgtgaattaatt
acaaaaactgatcatgacatttatgtagatgacatttctttcttgcaaagggaagataac
gttaatgtatcccaaattgatttaactgccaggggagtattaaatcctgaagatcaagga
gttttacataaatcaacagagtttggtgttttcaacaaaaataaaactggcttaccggcc
agtgtggatttaaaaataaaacaaaattcattttttagtgttaaacaaccagattttaat
aaatatttgatttcagattttgttgaaattcaacgaaatagtttttttacacttttagaa
aaaggtattatagaagaattttcaaaacgtaatccaattactaattcaaaaaaaacaatg
gaaatctttttttatccagattattatcaattaacaccacctgaatatagtcctagtcaa
gctattataaaatcaaaaagttatacatcaaaattatatattccagtgcaactaactgat
aaaagcaaaaatataatcaaattaaaatgggtttatattggcgatattccattaatgaca
aaacgtggtcattttattttaaatggatgtgcacgcgttatagttaatcaaatggtacgt
agccctggtatttattatcaaaaaaagatttatgaaaatttttcaaataaatggagcgaa
aaaccagaaaacacttttacacgttattttgcagatttaatttgtaatcgtggtacatgg
ttacgtattgaaatggataaatataataaaatttgggcgcaaatgaaacgcgttcccaaa
attcctattatgtggtttttaattgctgttggattaacagataaaattgttttaaaaact
gtaatggattcaaaaatcttattatataatttagacgaagatcctttaaatccacgaaaa
aaacctttaccttatgtaaaaacaccaccagctgcttggtcggctatttataatattgtt
tttgctaaaaaaatcaaagctcaagaaaaagccaaaaaaatgctagagttgacagaagga
aatccatcaagtaaatcgcaaacaaaaaataaaacttcagcttctaaaaaaagtaaaact
ttaaatgtggctaatactaaaggtaaaactccagcagaaaatataaaaactttatctgaa
ctaatagatttagaaaaagcactttttcttaaatcagagcaagggcgtaaatggatattt
aataaatttatgaatccacgtacttatgatttaggaaaagtgggacgtgttaatttcaat
cgaaaattgaaattatcgatttcacaagatatcacaacattaacaccacaagatttatta
gctgctactaataatttaattttagtttcaaaagggttacgtgagttagatgatattgat
catttaaaaaatcgacgtgtacgtacttcaggtgaattgattcaaattcaaattggtgtt
ggtttagttcgtttagagaaaacaatccgtgaaaaaatgacttacgcatcaggtttaagt
tcgttaccatcacaaaaatttgctttccgttcgtctaagcaacgtaatcaaagtcccgta
ggtgatgcagaaaatgctactcaattaactattgggaatctaattaatacaaaaccattt
aacggggctttacgtgagttttttggtacaagtccattatcccaatttatggatcaaata
aatcctttagctgaattaacccataaaagacgtttaagttcaatgggtcctggaggcgtt
actagagattcagccacgttagccattcgaggtattcatccttcacactatggtcgtatt
tgtcccgttgaaacccctgaaggtaaaaatactggattagtaaactcattaactgcttat
gctcgtgtcaatgcagcaggttatattgaaacacctttttatcgtgtttataaaggtcaa
gttcaaaagaaaactggattatattttttttctgcaaaacaagaagaaaaaattaaatta
ggtgctccagatttatatacatctgaaattggttttttaccaaaagcatcgatcccagtg
cgaattgttgaagattttacaaaaatatcacgtaatgaaattcaatatgtaggtgtagct
cctattcaaatgatttcaatagcaacatcattaattccattttttgaacacgatgatgct
aaccgtgctttaatgggttccaatatgcaacgacaagctgttcctatcttaaaacctcaa
cgtcctattgtaggaacaggcttagaagcacgagcagttagtgattctggtcatgtcata
acagctaaatcaagtggtattgttatgtatacaagttcaaaagaaataattatttattca
ctacaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (59)   

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