KEGG   Crassostrea gigas (Pacific oyster): 105324965
Entry
105324965         CDS       T03920                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03082  ATP-dependent chromatin remodeling
crg03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    105324965
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    105324965
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:crg01009]
    105324965
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crg03021]
    105324965
   03036 Chromosome and associated proteins [BR:crg03036]
    105324965
Protein phosphatases and associated proteins [BR:crg01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105324965
Transcription machinery [BR:crg03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     105324965
    SWI/SNF complex
     105324965
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    105324965
   PBAF complex
    105324965
   SWI/SNF complex
    105324965
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd
Other DBs
NCBI-GeneID: 105324965
NCBI-ProteinID: XP_011422550
UniProt: A0A8W8JQ74
Position
LG6:5692949..5698178
AA seq 373 aa
MAMFGTKTFGEKPKPFQIEEDGEFYYIGSEVGNYLRMFRGSLYKKYPSMWRRLLTVEERK
RISELNTGAPSLATNITLLKASEVDAIFEGNDDMFKTVSINSDSSYQISRDYKSKRNNWV
PTVPSSSHHLDAVPCATPINRNRLGKKQVRTFPMCFDDTDPAGIHDNANQQEQLVPIRLD
MEYEGQKLRDCFTWNKNESLITPEQFAEILCDDLDLNPINFIPAISQAIRQQIEAYPQEN
LLEEQKDQRVILKLNIHVGNISLVDQFEWDMSESDNSPEDFAQTLCAELGLGGEFVTCIA
YSIRGQLSWHQRTYAFSDQPLPIVEVAIRNQNEADAWCPFLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPSW
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggcgatgtttggcacaaagactttcggcgaaaagccgaaaccctttcagatagaggag
gatggggaattttattacattggatcagaggttggaaattatttgcgaatgttcagggga
tctctctacaagaagtacccgtctatgtggaggaggctgcttaccgtggaggagaggaaa
agaatatcagaactcaacacaggagcgccatccctagctaccaacatcacgctgttgaag
gccagtgaagtggacgccatctttgaggggaatgatgacatgtttaaaacagtatccatc
aacagtgattcttcttaccaaattagccgtgattacaaatccaagcgtaacaactgggtt
cccacagttcctagcagctcacatcatctggacgcagttccctgtgctaccccaatcaac
agaaacagattaggaaagaagcaagtcagaacctttccaatgtgttttgatgacactgat
ccagctggtattcatgacaacgctaatcaacaggaacagcttgttcccatccgtctggat
atggagtatgagggtcagaagcttcgagactgcttcacctggaacaagaatgagagcctc
atcactcctgagcagtttgcagagattctgtgtgatgatttagatctgaaccccatcaac
ttcataccagccatatctcaggccattcgacaacagattgaggcataccctcaggaaaac
ttgttggaggagcaaaaggaccagagggtcattttgaagttgaatattcatgtcggtaat
atatccttggtagaccagtttgaatgggacatgtctgaatcagataactcacccgaggac
tttgctcagaccctgtgtgcagagcttggtctgggtggagagtttgtcacatgtatagca
tacagcataagagggcagctgagctggcatcaaagaacctacgcattcagtgatcagcca
ttgccgattgttgaggttgccattaggaatcagaatgaagcagatgcatggtgtccattc
ttagaaaccctcacagatgcagaaatggagaaaaagatccgtgaccaagacagaaacaca
aggagaatgaggcgtttggccaacacagcgccatcatggtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (96)   
   KEGG ORTHOLOGY (1)   
   RefGene (92)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (108)   

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