KEGG   Crassostrea gigas (Pacific oyster): 105328946
Entry
105328946         CDS       T03920                                 
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
  KO
K15271  ATP-dependent DNA helicase HFM1/MER3 [EC:5.6.2.4]
Organism
crg  Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:crg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crg03036]
    105328946
Enzymes [BR:crg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     105328946
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    105328946
SSDB
Motif
Pfam: Sec63 DEAD Helicase_C ResIII HHH_5 AAA_22 Peptidase_S48
Other DBs
NCBI-GeneID: 105328946
NCBI-ProteinID: XP_034327468
Position
LG4:complement(39400699..39424613)
AA seq 1591 aa
MENSVYSQMFYGDSQVTRFTQPSSNEGDADEDNEDCPVPAAPGTDFLPASQLDPFIDFEP
SQIFRSSQNKASKEKVLKEIPNDSFRTPSEKTNSPMVSQSQRRQLFKPPTKANHFQASGK
GESRTFQSNSSNDNSALRSSTLSDSAANQDFSLTQPGSNVQIVSPSTVPALKKKYYTPSP
LVLNQGQNAGVELKSTKEIAEKYRCVFPFPYFNIVQTKVFDEIFYKDSPIVVCAPTGAGK
TVVFELAIIRLLMKTEHTSLGANFKIVYMAPIKALCSERCSDWSEKFERIGLKCRELTGD
SELDDYYQLQQVNIIFTTPEKWDSMTRRWRDNTFIVQSICLFLIDEVHVLSDASRGATME
AVISRMKTIQASMNRCPPGSLTPRLRFVAVSATIPNIQDIAEWLGDKVPAVNFNMDDSLR
PVRLRKVVLGFPFDEQKGSDFQFDMSLSYKLARIINTYSDNKPTLVFCSTRKSTQQAAEI
LVKDIGSTYIKTYFQRQALQTCANSLKDNKLRDLVARGVGYHHAGLDVHDRKAIEEIFLE
GQLMVLVATSTLAMGVNLPAHLVVLKSTSYYNLGVHVEYSDTQILQMMGRAGRPQFDTTA
TAVIMTKNQTKEKYESLVNGTQLIESSLHKNLIEHLNAEIVLHTINDISIAMEWIRYTFL
YIRVMKNPKHYGMPLGMNREQIEKRLQELCMRNLNLLNTHGMITMDDETIDVKSTEPGKL
MARYCIAFETMRRFSKLGATETTAELLYEMCGCDEFSEVQLRNKEKKTLNTFNRDKNRVT
VRFPVTGKVKTKQMKVNILIQVALGCLLLQDFSLQQDTTRIFRAAQRMSRCLVELLWLKD
EYKSLLSGVRLMKCLKARLWEDSRHVSKQLDGIGPALSNALVNAGMTTFQKISDTNPREL
ELIVNRHPPFGNQMRDMVSGLPKYELTIEQVSKYSEDMADIVVHLVIANPEQVSTRRTLP
ENHTCVLLIGDEDNRVVYKRKIMDAYLLKEHGITKKLEVRRSEKGPNLFINLISQEWVGL
DVQSTYTPYYIGAKKISNNANSLESAQASQPTQTPSVSSAGTEECGHRCVNKAMCGHDCC
RNGVNKRKTPKTRPKTQVPKHKPMDSYVSTLKDRVSQTPNIAKRLKMAGNNTFGTKLDFN
RFAYSPQKRKVTSSRPRQLVQNTNGDDIEETCLDELEILNSRGFHTAQANKDIAPSCSKD
WTDLDIYLKHNTVEDEMPCAYEDDDQVEDKLQYGYGENQNFTEENETDFERFRSSAGVVS
KSKDCLKFPTPRFGEVLAWSNDKENIGPCPLSSRRNMLKSSRHAWGLNQDTLDVLSCSDG
YDDRNRTSFDQKDMRDERSNHDSHADMDCYIQEQNWNINPPLQTSGKKPKYIKNNLQCCP
RNSNENCSRFNSKSKFNTMAWDGLECQRDKTVPDVLDDKSKSSAVEGDWSGSDSDLMIVD
DPESRDSLYWKNSTEEKTRVTSHFSHSVQNDVCQNMYSVGSNYCEKSEKLRKAEREMEMF
LFGSDANSKMETKETDTSEGYFKSNDTNKRPNKVLKLNDRDIIHQKPQDFQRYDEISTDV
NLAQQSSACTPCYGGPRPNGKTFSSIFDALF
NT seq 4776 nt   +upstreamnt  +downstreamnt
atggagaacagtgtctacagccagatgttttatggagacagccaggtcacacgatttaca
caaccatcgagtaacgagggcgatgctgacgaagataacgaggattgcccagtgcccgcg
gccccggggaccgattttctgcctgcatcccagttagatccattcattgattttgaacca
tcccagatattccgaagctctcaaaataaggcatcaaaagaaaaggttcttaaggagatt
ccaaatgactcattccgtacaccatcagagaagacaaattctccaatggtttctcaatca
caaagaagacagctatttaagccgccaacaaaagcaaaccattttcaagcgtctggaaaa
ggagagagccgcactttccaatcaaattcgtctaatgacaatagcgcgctaagatctagc
acactgtcagattctgcagccaatcaggatttttcactcacacaacctgggagtaatgtt
cagatcgtctcaccatctactgtaccagctctaaaaaagaaatattacactccatctcct
cttgtgttaaatcaaggacagaatgcaggagttgagttgaaatctaccaaagaaatagcc
gaaaaatacagatgtgttttcccatttccatattttaacattgtacagaccaaagtattt
gatgagattttctacaaggattcccctattgttgtgtgcgcaccgaccggggccgggaag
acagtggtgtttgaactggcgatcatccgtctcctcatgaaaacagaacatacgtcattg
ggcgcgaattttaaaattgtctatatggccccaataaaagccttgtgcagtgagcgttgt
tctgattggtccgagaagtttgaacggattggattaaaatgtcgagaactgaccggcgac
tcggagcttgatgattactatcaactccagcaagtcaacatcatattcacaacaccggaa
aagtgggacagcatgactagaagatggcgcgacaatacgtttatagtgcagtctatttgt
ttatttctgattgatgaggtgcacgttttgagtgacgcctcgcgtggtgctaccatggag
gcggtgatttcccggatgaagacgatccaggcgtcaatgaatagatgtccccccggatcc
ttaactcccaggcttagattcgtggccgtgtctgccaccattccaaacattcaggatatc
gccgaatggctgggggataaagttcctgctgttaatttcaatatggatgacagtttgcgg
cctgtccgactccggaaggtggtgctgggattcccgtttgacgaacagaaaggctcggac
ttccagttcgacatgtccctcagctataagctcgccaggatcattaacacgtactctgac
aacaaaccaacactcgtgttctgttctacaagaaagagtacccagcaggcggcggagatt
ctggtgaaggacattggtagtacctacataaagacgtacttccaacggcaggctctacag
acctgtgctaactcactcaaagacaacaagctcagggacttggtagccaggggagtgggc
tatcatcacgctggtctcgatgtccacgacaggaaagccatagaggagatatttctggag
ggccagctgatggtgttagtggctacgagcacactagcaatgggcgtcaacctcccagct
cacctggtggttctaaaatccacgtcctattacaacctgggtgttcacgtggaatactcg
gacactcagatactgcagatgatgggacgagcggggcggccacagtttgatactacagcc
actgcagtcatcatgaccaaaaaccaaaccaaggaaaaatacgaatctttggtgaatgga
acccagctgatcgagagcagtttgcacaagaaccttatcgaacacttgaatgccgagatt
gtcctgcataccatcaacgacatctctatcgccatggagtggattcgatatacatttctg
tatatccgtgtcatgaaaaatcctaaacattatggtatgcctttggggatgaacagagaa
caaatagaaaagaggctacaagaactttgtatgcggaacttgaatttgttgaacacacat
ggaatgatcactatggacgatgaaaccattgatgtcaagtccacagaaccaggaaaatta
atggccaggtattgtattgcatttgagacaatgaggagattttctaaactaggggcaact
gaaacaaccgctgaactattgtacgagatgtgtggctgtgatgaattctcggaggtccag
ctcagaaacaaggagaagaaaactttgaatactttcaacagagataaaaacagggtcact
gtcagatttcctgtaactggtaaagtaaagacgaagcaaatgaaggtcaatattttgata
caagtggctcttggttgtcttctgctgcaagacttctccctacaacaagacaccaccagg
atatttagggcggcccagaggatgtcaagatgtttagtggaacttctgtggctcaaagac
gaatataagtctctgttgagtggtgtccggctgatgaaatgtttgaaagccaggctctgg
gaggactccagacatgtctctaagcagctggatggaattgggccagcgctttcaaacgct
ctggtcaatgccggcatgacaacttttcagaagatttccgacacaaatcctagggaacta
gaattgattgtcaaccggcatccaccatttggaaaccagatgagggatatggtgtctgga
ctaccaaaatacgagttgactatcgaacaggttagcaaatacagcgaagacatggctgac
attgttgtacacttagttatcgccaacccggaacaagtcagcacgaggaggacacttccg
gaaaaccacacatgcgttcttctcataggagacgaggacaacagagttgtttacaagagg
aagataatggatgcatatttactgaaagaacatggaattacgaagaaactggaggtcaga
cggtcagagaaaggacccaatctgtttatcaatcttatcagccaagaatgggttggactt
gatgtgcagagtacgtatactccttattacattggagcaaagaaaatatcaaacaacgca
aactctctggagtcggctcaagctagtcagccaacacagactccctctgtttcctctgct
gggaccgaagagtgtggccaccgctgtgttaataaggctatgtgtggtcacgactgctgt
cgaaatggtgtcaataaaaggaagacacccaagaccagacccaaaacccaggtcccaaag
cacaaacctatggactcctatgtcagcaccttgaaagacagagtttcacaaacgccgaat
attgcaaaacgattaaagatggcaggtaacaacacctttggcaccaaattggacttcaat
agatttgcatacagtcctcaaaagaggaaagttaccagttctcgtccacgtcagcttgtc
caaaacacaaatggtgatgacattgaagaaacatgtttagatgaattggaaatattaaat
tcaagaggttttcacacggcccaagccaacaaggatattgctccctcttgctctaaagac
tggactgatctggacatctatttgaaacataatacagttgaagatgagatgccatgtgct
tatgaggacgacgatcaagttgaggacaagttgcaatacggttatggggagaatcaaaat
tttactgaagagaatgagacagatttcgaaagatttagatcatctgcgggtgttgtatcc
aaatcaaaggactgtttgaaatttccaacaccacgattcggtgaagtccttgcctggagt
aatgataaagaaaacattggaccatgccctctatcgagcaggagaaacatgctaaagagc
tctcgtcatgcatggggtcttaatcaagacactttggacgttctatcatgttcagatggt
tatgatgataggaatcggacatcctttgaccagaaggacatgcgtgatgaaagaagcaac
catgatagccacgcagatatggactgttatatccaggaacagaattggaatatcaatcca
cccctacaaacaagtggtaaaaagccaaaatatattaaaaacaatctccaatgttgtccc
cgcaactctaacgaaaattgttctcgttttaattctaaaagcaagttcaacaccatggca
tgggacggcttagagtgtcaaagggataaaacagtccctgatgtgttggatgataaatcc
aaatcttctgctgtggaaggagattggagtgggagtgacagtgatctcatgattgtggat
gacccagaatccagggatagtctctattggaaaaattcaacagaagagaaaaccagagtc
acttcacacttttctcattctgtacagaacgatgtttgccagaatatgtattctgttggc
tctaattattgcgagaaatctgaaaaacttcggaaggcagagagagaaatggagatgttc
ttgtttggatccgatgcaaattccaaaatggaaactaaagaaacagatacttcagaggga
tattttaaatcaaatgacactaataaacgtccaaataaggtactgaaattaaacgataga
gacattatacatcagaaaccccaggattttcagaggtatgatgagatatcaacagatgtg
aacttagcacaacaaagttctgcttgtacaccctgttatggtggacccagacccaacgga
aaaacgtttagtagtatatttgatgctctgttttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (7)   
   Pfam (7)   
All databases (57)   

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