KEGG   Crassostrea gigas (Pacific oyster): 105329196
Entry
105329196         CDS       T03920                                 
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
Organism
crg  Crassostrea gigas (Pacific oyster)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 105329196
NCBI-ProteinID: XP_034328191
Position
LG4:complement(28929402..28967220)
AA seq 1761 aa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NT seq 5286 nt   +upstreamnt  +downstreamnt
atgggaccgcgggatgtgattttattcctggtggttcttggactttctcttgatctatct
cttggagcagcttgtaaaggatgtagttccaccgtgtgtttatgtgccggccagaaagga
gtgaggggagcacctggtttacctggattgggaggctcccaagggttacctggatttatc
ggaaatgaaggtcccccaggacctcaaggattcagaggagatggaggagaacgaggaggc
gtcggtgaaataggaaacagaggcgacgttggtccacagggaatgacaggaattcctggg
attccaggttatgagggcttagaaggccctgtaggacctcaaggttacccaggatgcaat
ggtacaaagggtttgcccggtgttccaggagtgagtgggttgccagggatacagggtcca
agaggagagccaggattttatggtaccaagggagatcctggagatggattttatggattt
ggtccaaagggtgatccaggagacgccgggagacggggaccctccggtgaccccggtatt
ccaggtagaccaggtcccccgggacctcagggaccagagggacgcaggggacaacctgga
actcctggagtcaaaggcccgaaaggtcaaatgggagacccagccagaaacccagccaaa
ggtcaaaagggagagaaaggatttgatggattgagaggccccaagggaattattacaact
cttcctggcaacaagcccaaccagattagtgcggggcccgtaggggatcgaggagatgac
ggttacgacggacgtcctggattgcctggttatcctggacagaggggagaaaatggcttg
cccgggatggcaggtgataaaggcccatttggaatgccagggatgcagggaatgagggga
aaacgtggaaaagatggtccgccaggaccttttggattcaaaggagacaagggatcaaac
ggaaaccctggctacgatggattaccaggcgaaataggccgaactggagaccctggaaga
cagggaatgaggggagatttgggagaccggggcccgcgtggagatcctgaaggaggaggt
caaggtcggcctggtcctagaggtcgtccaggagacccaggtcccgagggacctcaagga
tatcctggtttggatggtgttgatggtcctatcggaagagatggacctccaggtctccca
ggtcctgatggaattccaggaaacagaggactcccagggttttcctatcctggagatcgg
ggagatataggtgattttggtgtggacggagttccagggttgcctggacttcctggactc
aaaggtagagaaggagagcagggaccattcggagacacagtacagggatatcccggggaa
tcaggacaagttgggcgtcctggactggatggacttcctggaatgcggggagagccgggt
cctcggggatttgatggtgtcccgggtctaggatttgatgtaacaggtccagaaggccca
gtgggatttcctggagaagagggagatccaggaattccaggagaagatggaagggacgga
attccaggggaaagaggtccaaggggagatgactgtggagtgtgtccagggggggagccc
ggtttccgtggtgactctggtgaaccaggtctgtttggtcttcccggacaaccaggacag
tcaggtttccaaggacaaccaggtgaccctggcgtgccaggattccccggaataccaggt
gctaaaggtcaaccgggtccagcaggtatccctggagaaataggtcgagttggaatgaaa
ggagagcctggagaatttcagatgccacctggagaactccttacagggcttaagggagag
aatggtattccaggtccagtaggaagggccgggcaacccggagccgtaggtcctagagga
cctaaaggttacgctggtgtaccgggagaaagaggtcaagtaggagatccaggtttggag
ggtctggatggcttacctggaatgcagggagaaaacggccttcctggaatgcctggagat
tccattccaggcgaactgggtcgaactggacttaagggatttcccggaatagaaggttac
ccaggcttaaaaggactcagaggagagaaaggtgaaccctcccgaatcaacattccgcct
ggaaagaagggagaacctggatttatgggaattcctggagaagatggccaagatggactt
ccaggaatatttggaatgaaaggggaggatggctttcccggcatacctggagaaatgggg
cgagttggtatgaagggtgatgacggtcagccaggtatccccggggagagaggccgcgtg
ggtgaaaagggttaccctggggtgccaggattcgctggattacctggtctacctggaaac
gggggtctacctggagaatcaggtgtggtcggactgcctggattatcgggagaccctggg
attcctggacttgatgcaccccccatggaacttctcaagggcgaaccgggagacccaggc
ttgcccggattgaatggggagaggggataccctggagagatagggcgtgtgggaagacct
ggattctccggaccaaagggaattagaggtgactctggagagtatggatcccctggattc
ccaggattaaagggggaaaaggggatcataggattcagaggatttcctggcctgaaggga
tttagagggagagacggaatcccaggcgaggtaggcttaactggtgccccaggggatcct
ggtcttccagggttacctggtcaagatgggcttaaaggtcagcgtggattggatggtgcc
cctggattggacggaactcctgggcgtgagggcccagcgggagagcccgggctctcagga
ctgcccggttatgatggactgcctggaatgaagggagccactggatttcagggacgatca
ggtgaaccaggtttacctggacaattaggagttccaggtgtaaaaggttctagaggtgag
tctggccttcccggatttcccggttcattcggattgcctggattcaagggagaacctggt
gaagttggattcccggggccagagggtgacattggtcaacctgggttaccagggctccaa
gggcttcccggagacaacggaattccaggagaagtaggagttgttggaagacctggacaa
gatggtttcccaggccggaaaggagaaaggggagaggttggaaattccattcctggagag
ccgggacgaaatggtagacctggaagtgatggtttccccggattgaatggattgaaagga
gagaaagggggtcccggacttggcggaattccaggcaatgatggagagcgaggtgtgata
gggttacctggaataccaggagaacaaggtcgatccggactgcctggattcaagggagag
aatggagagccgggacgtcaaggactggatggattcccaggagaaaggggtgtgagtggt
ttaccaggtgctgatggcttccccggagccccaggtgatcggggtgcgtttggttaccca
ggagaacggggcgtggttggtgccccaggagagcaaggatttgacggaacgcccggacgt
tctggtcccgacggacttaaaggattcccaggtgatcccggtcaggacggactcccggga
ttcccaggaatgcttggagaagatggtctgcctggattcgaaggactgaagggagacgat
ggaatcccaggggaggagggtagggctggccgtccaggaaggaagggagatcagggtgat
tttggatttgtgggtcgtcccggacctccaggagaggacgcttttggtgtgatcggagag
cccggagactttggaattcccggacagacaggtcgtcctggtgagaaaggaatggaaggt
gaagacggtttcccaggattccccggtctgaagggaatggcaggcgaggctggttacggt
cctcaagggttcaaaggagagagaggagataatggtttccccggagaacgagggcgtgtt
gggcttaagggatttcctggagagcctggattaaatggaatccctggacagaagggagaa
cggggtttttcaggattccccggagaggagggacctgtgggtaatcaaggattccgtgga
cgaaagggtgaaaggggtctggatggcattccgggcgaacaaggacgaacaggagagatg
ggattccctggagagaatgggcgtgtcggtgtccctggtgatcgagggccagacggtctg
gatggatttaagggcgagcaaggagatttcggattgcctggcttgcctggagatcctgga
cccaagcctacaattcaggctctgccctggcagaaaggagagaaaggaaaccccggtcca
gagggagaaccaggtcggaatggactggccggagagagaggtgatgatggaatcagaggc
tttaccggtgatccaggccgaaatggagatataggtgaaccaggagtaaagggcccccca
ggaaacaacggcctatccggaattccaggggagcggggcagacaagggttaccaggagca
aagggattcgcaggactacccggattatccggagcagtgggagagggatacggaatctac
tttgccaggcacagtcagacaactgttgtacctcaatgtccagcaggaactgccaaatta
tgggacggcttctcattggttcatgtcataggaaacggccgaagtcatggacaagattta
ggaacctctggaagctgtctgaggcgattcagcaccatgcccatcatgttttgtaacatc
aataccgtctgtaacgtggcctggagaaacgactacagctattggctgtccactagagaa
cccatgctgccaatgatgaatcctgtggaaggccccgcactccagcggtacatcagtcga
tgctccgtctgtgaagctgtgtcagaggtcgtggctgttcacagtcaggaaagcagaatt
ccagattgtcccagtggattccgtagtatgtggacaggattcagttttatgatgtcatct
ggagcaggaggaaggggtgctggccaggcattagagtcacccggatcttgtctggaggat
ttccgggccactcctttcattgaatgccacggcaatggtcgttgcaaccactacgccaca
tcctacagcttctggctggcaacactgagagcatacgaagagttccgaaccccgatatcg
gagacattgaaggctggctctcaggagcagcgcatcagtcgttgcagagtgtgtgcacgc
cagtag

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (81)   
   RefGene (78)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (88)   

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