KEGG   Crassostrea gigas (Pacific oyster): 105331606
Entry
105331606         CDS       T03920                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B-like isoform X2
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03250  Viral life cycle - HIV-1
crg04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    105331606
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    105331606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:crg04131]
    105331606
   03400 DNA repair and recombination proteins [BR:crg03400]
    105331606
Membrane trafficking [BR:crg04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    105331606
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    105331606
SSDB
Motif
Pfam: AAA Vps4_C AAA_lid_3 AAA_16 AAA_5 MIT AAA_14 AAA_22 TIP49 RuvB_N IstB_IS21 AAA_18 DUF815 AAA_25 AAA_17 AAA_33 AAA_2 nSTAND3 AAA_24 RNA_helicase PhoH Mg_chelatase Torsin AAA_7 ResIII AAA_28 NACHT Parvo_NS1 Tae4 bpMoxR AAA_30 MCM Sigma54_activat Viral_helicase1
Other DBs
NCBI-GeneID: 105331606
NCBI-ProteinID: XP_011432174
Position
LG6:7174865..7186613
AA seq 401 aa
MKYEAQSEKAKDSIRAKCAQYLDRAEKLKQFLNKKSKKPVADGGGSGSNNKGKSAKNNES
ESDEEEDPDKKKFSNQLSGAIVMERPNIKWDDVAGLHMAKEALKEAVILPVKFPHLFTGK
RKPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKTLFSLA
RENKPSIIFIDEVDALCGSRSENESESARRIKTEFLVQMQGVGVDNDGVLVLGATNIPWV
LDSAIRRRFEKRIYIPLPEAPARTEMFKLHLGNTPHSITEEEFRELGKRTDGYSGADIQV
VVRDALMQPVRKVQTATHFRRVRGPSRDDPNVIVDDLLTPCSPGAPGAIEMTWTDVEGSK
LLEPIVSMSDMLMSLATSKPTVNEADLKKLEEFTADFGQEG
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgaaatatgaggcacagagtgaaaaggcaaaagacagtatcagagccaaatgtgcacag
tatctagatagggcagaaaagctgaagcagtttttgaataaaaaatctaaaaagcctgtt
gcagatggaggagggtcaggatcaaataataaagggaaatctgcaaagaacaatgaatct
gaaagtgatgaggaggaagatccagacaaaaagaagttttccaatcagctatcaggtgcc
attgttatggaaagaccaaatataaagtgggatgatgttgctggtttacacatggctaaa
gaagctcttaaagaggctgtcattttacctgtaaaattccctcacctgtttactggtaaa
agaaaaccttggagggggattttattgtttggaccccctggtactggaaagtcttaccta
gctaaggcagtggctaccgaggcaaacaactccacatttttctcggtgtcctcatcagat
ttggtgtcaaagtggctgggagaaagtgaaaaattggtaaagacattattttcgttggct
cgtgaaaataaacctagcattatattcattgatgaagtggacgcactgtgtggatcgcgt
agtgagaatgagtctgagtcagctcgtagaatcaagaccgagttcctggtccagatgcag
ggtgtaggagtggacaatgatggggtccttgtgctgggagccaccaatataccatgggtc
ctagactcggccattaggagaagatttgaaaagagaatttatattcccttacctgaagcc
cctgcaagaacagaaatgttcaaacttcatctgggaaacacccctcattcaatcacagag
gaagaattccgagaacttgggaagagaacggatgggtactctggagctgacatacaagtc
gtggtccgtgatgctctgatgcagcctgtcaggaaagtccagacagctacacactttaga
cgagtgcgaggtccatcacgagatgatcctaatgtgatagtggatgaccttttgacccct
tgttctcctggagcccctggggccatagagatgacctggacagatgtggaaggaagtaaa
cttctggagcccattgtatcaatgtctgacatgttgatgtcattagccacatctaaacct
acagtgaatgaagcagacttaaagaaactggaagaattcactgctgattttgggcaagaa
ggatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (137)   
   KEGG ORTHOLOGY (1)   
   RefGene (133)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (34)   
   Pfam (34)   
All databases (183)   

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