KEGG   Crassostrea gigas (Pacific oyster): 105335923
Entry
105335923         CDS       T03920                                 
Name
(RefSeq) tRNA pseudouridine synthase A
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
crg  Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:crg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:crg03016]
    105335923
Enzymes [BR:crg01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     105335923
Transfer RNA biogenesis [BR:crg03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    105335923
 Prokaryotic type
    105335923
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-GeneID: 105335923
NCBI-ProteinID: XP_034327160
Position
LG4:17249734..17272539
AA seq 486 aa
MIRRLASRLRSYISKIMSEVTPESNLKRKADNEQETSSKKTKNIKKEQVPQMQGNPNVKR
KVAVLIAYNGKGYHGIQRNPPFPSIEEEILKALLEVKAITQEQYDKPSLVSFQRAARTDK
HVSAASNILSLKMVTNVENFLDNVNGILPNQIRMLGFKRTTKGFDCKTQCTGRTYMYVLP
TYALAPVEMTVTDNYRVTDEVLTRVNEILQLYVGTHNFHNFTSGIKPTERRAYRYIIKFE
CGKPFVREGLEFVTCKVRGQSFMLHHIRKMIGLMIAVVKGYCKEDAIELSWGSEKVDVPK
APGLGLLLDELYFDGYNKKWGRDGLHEPIEWSEFEEELEKFREEYILPEIYKGEKNERVM
WDWLKTLHMHSFDVESKNRRRNNYSIPGSEESTRDVNEESQNTNLDLTDGDTGGEVITTN
RTEVEANPQTVLSHPKEDGEVKKQDFTKSDEVLKGECEIGHKDLEVGEGQEGDGQDKINS
VGSQSL
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgataagacgtttagcttccagattgcgttcttatatttcaaaaatcatgagtgaagtc
acccctgaatcgaatctgaaaaggaaagcagacaatgaacaagaaacttcatcaaaaaag
accaaaaacattaaaaaggaacaagttccacaaatgcaaggtaacccaaatgtaaagaga
aaagttgcagttttgattgcctataatggcaagggataccatggcattcaaagaaaccca
ccgttcccctcaatagaagaagaaatattgaaagctctcttagaagtgaaggcaataaca
caagaacagtatgataaacccagcttagtgagtttccagagggcagccagaacagacaaa
catgtctccgcagcaagtaacatactctcattgaagatggtgacaaacgtagagaacttt
ttggacaatgtgaacgggatattgcctaatcagatcagaatgctggggttcaagaggaca
acaaaggggtttgattgcaagacacaatgcactggccgcacatacatgtatgttctaccc
acatacgctcttgctcctgtggaaatgacagtgacagacaattatcgagtaacagatgaa
gttctcactagagtcaatgaaattcttcagctgtatgttggtacccacaactttcacaat
ttcacttcaggcataaaaccaacagagagaagggcctacagatacattattaagtttgag
tgtgggaagccatttgtgcgggaaggtctagagttcgtgacctgcaaggtcaggggtcag
agtttcatgctgcatcacataaggaaaatgataggtttaatgattgccgtagtgaagggc
tactgtaaagaagatgctattgagttgtcatggggatcagaaaaggtagatgtcccaaag
gccccaggactaggtttactgcttgatgagctctactttgatggttataataaaaaatgg
ggcagagatggtctacatgaaccaatagaatggtctgaatttgaggaagagctagaaaaa
ttcagagaggaatatatattgccagaaatttacaagggagagaaaaatgagagagtaatg
tgggactggctgaaaaccttgcacatgcactcatttgatgtggagagcaagaacagaaga
agaaacaactattcgattccaggctcagaggaaagcacgcgggatgtgaacgaggagtcc
caaaacactaacctcgacctcacagatggggataccggaggtgaggtcataactacaaat
agaacggaagttgaggcgaatccccagactgtgctttctcatccgaaggaagatggagag
gttaaaaaacaagactttacaaaatcagatgaagtcttaaagggagaatgcgaaataggt
cacaaagatctagaagtgggtgaaggtcaagagggtgatggtcaagataaaattaactct
gtgggctcccaaagtctatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (41)   

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