KEGG   Crassostrea gigas (Pacific oyster): 105337120
Entry
105337120         CDS       T03920                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03082  ATP-dependent chromatin remodeling
crg03083  Polycomb repressive complex
crg04330  Notch signaling pathway
crg04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    105337120
   03083 Polycomb repressive complex
    105337120
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    105337120
   04350 TGF-beta signaling pathway
    105337120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crg03036]
    105337120
Enzymes [BR:crg01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     105337120
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     105337120
   HDAC complexes
    Sin3A-HDAC complex
     105337120
    BRAF-HDAC complex
     105337120
    REST complex
     105337120
    SHIP complex
     105337120
    MiDAC complex
     105337120
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     105337120
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    105337120
  Chromatin remodeling factors
   NuRD complex
    105337120
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 105337120
NCBI-ProteinID: XP_034312098
Position
LG10:28119352..28125929
AA seq 522 aa
MTTQPHNKKKICYYYDGDIGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAT
QEEMTKFHSDDYIKFLRSIRPDNMSDYNKQMQRFNVGEDCPVFDGMYEFCQLSTGGSVAG
AVKLNKQAADIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYESI
FKPVMTKVMEMYQPSAIVLQCGADSLSGDRLGCFNLTLKGHGKCVEYMKKWNLPLLLLGG
GGYTIRNVARCWTYETSIALGVEIANELPYNDYFEYYGPDFKLHISPSNMANQNTGEYMD
KIKTRLFENLRMLPHAPGVQMTAIPEDALNDESGEEEDKENPDERISIRASDKRVTGEGE
YSDSEDEGEGGRKDRANYKPKAKRMKTESEEKKEAGDKVAKKEEKEVKKEAENNKEEAKA
PEKSSEEKSEAPEKKESSPAKETAAESKESSDSNGTPQKMEH
NT seq 1569 nt   +upstreamnt  +downstreamnt
atgacaactcagccgcacaataagaagaaaatctgttactattatgatggtgacattggc
aattactattatggccaaggtcatccaatgaagccacacagaattagaatgacccacaat
ctcatccttaactatggactctacaggaaaatggaaatatatagaccacacaaagcaact
caagaagaaatgacaaaatttcacagtgatgactacattaagtttctacgcagcatccgg
ccagacaatatgtcggattacaacaaacagatgcagagatttaatgtaggagaggattgc
ccagtgtttgatgggatgtatgaattctgtcagctctcaacagggggatctgtggctgga
gcagtgaagctgaataaacaggcagcagacattgccattaactgggcgggcggacttcac
catgccaaaaagtcggaggcttcaggcttttgttatgtaaatgacattgtgctggccatt
ctggaacttctcaagtaccaccagagagtgttgtacgtggacattgacattcaccatggt
gacggtgtagaggaagccttctacaccactgaccgagtcatgacagtctcatttcacaag
tacggagagtacttcccaggaactggtgacctgagggacattggagcaggcaagggtaaa
tattacgctgtcaactttcctctccgagacgggattgatgatgagtcatacgaatcaatt
ttcaaacccgtaatgaccaaagttatggagatgtaccaacccagtgcaatagtcctacag
tgtggagcggactctctgtcgggggacagactgggatgttttaacctcacactcaaaggt
cacgggaagtgtgtggagtacatgaagaagtggaacctgcccctgttgttgctgggaggg
ggagggtacaccatcagaaacgtggcccggtgctggacctacgagacctccatagctctg
ggagtggagattgccaacgagttgccatacaatgactactttgagtattatggaccagac
ttcaagctacatatcagcccctcaaacatggcaaatcaaaacactggggaatacatggac
aaaatcaaaactcgtctctttgagaatttgaggatgttgccacatgcacctggtgttcaa
atgacagctatccctgaggatgctttaaatgatgagagtggagaagaggaagacaaagaa
aatccagatgaacggatttcaatccgagccagcgacaagcgtgtgactggggagggtgaa
tattcggacagtgaagatgagggagagggagggaggaaggacagggccaactacaaaccc
aaggccaagaggatgaagacagaatcagaggagaagaaggaggcaggggacaaagttgca
aagaaagaagaaaaggaagttaaaaaagaggcagaaaataataaagaggaggcaaaagct
ccagaaaagagctcggaagaaaaatcagaagcacctgagaaaaaagaatcctcgccagcc
aaggaaacagcagctgaaagcaaggaatctagtgactcaaacgggactccacaaaaaatg
gagcattag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (235)   
   KEGG ORTHOLOGY (1)   
   RefGene (231)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (247)   

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