KEGG   Crassostrea gigas (Pacific oyster): 105348485
Entry
105348485         CDS       T03920                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03018  RNA degradation
crg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105348485
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105348485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crg03019]
    105348485
   03041 Spliceosome [BR:crg03041]
    105348485
Messenger RNA biogenesis [BR:crg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105348485
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105348485
Spliceosome [BR:crg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105348485
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 105348485
NCBI-ProteinID: XP_011456230
Position
LG10:complement(45120489..45128722)
AA seq 133 aa
MLPLSLLRTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRMPECY
IRGSTIKYLRIPDEVIDMVKEEVIQKSKGRGEMRGRGGPQRGGRGGRGAFGSRGGGRGGG
RGGQQRPGKGRGD
NT seq 402 nt   +upstreamnt  +downstreamnt
atgttgccattatcattattaaggacagctgtcaatcatcctatgcttgttgagttaaag
aatggagagacatataacggtcatttagtcagctgtgataactggatgaacatcaatttg
agggaagtcatttgtacatctagggatggtgaccggttttggagaatgcccgaatgttac
atcagagggagcaccatcaaatatctcagaatacccgatgaggtgatagacatggttaag
gaggaggtcatccagaagtcaaagggcaggggagagatgaggggtcgagggggcccccaa
aggggcggtcgtggaggaagaggtgcattcggaagcaggggtgggggacgaggaggtggg
cgtggggggcagcagaggcccggcaagggtaggggagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (90)   
   KEGG ORTHOLOGY (1)   
   RefGene (86)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (99)   

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