KEGG   Carnobacterium sp. 17-4: CAR_c12530
Entry
CAR_c12530        CDS       T01452                                 
Symbol
topA1
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
crn  Carnobacterium sp. 17-4
Brite
KEGG Orthology (KO) [BR:crn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crn03032]
    CAR_c12530 (topA1)
   03400 DNA repair and recombination proteins [BR:crn03400]
    CAR_c12530 (topA1)
Enzymes [BR:crn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CAR_c12530 (topA1)
DNA replication proteins [BR:crn03032]
 Prokaryotic type
  DNA Topoisomerases
   CAR_c12530 (topA1)
DNA repair and recombination proteins [BR:crn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CAR_c12530 (topA1)
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom RNA_POL_M_15KD Zn_ribbon_recom HypA
Other DBs
NCBI-ProteinID: AEB29945
UniProt: F4BRM5
Position
complement(1299850..1301463)
AA seq 537 aa
MEKVKKGLSAGRVQSVALKLICEREDEINRFEPEEYWSIGANFKKDKKKFKANFYGLKGK
KQALSNAEDVQKIIKELDGDQFEVMSVTKKERLRNPALPFKTSSLQQEAARKLNFRTRKT
MMVAQQLYEGISLGRGGAVGLITYMRTDSTRIALSAKNEAAEYIIKEFGPEYAASKPRIG
KKAEGDQDAHEGIRPSSVLRTPKEVEKYLTKDQYKLYNLIWSRLVASQMTPAVFDTMKVD
IAQKDVYFRANGSKVKFPGYQKVYIEGNDEGKEEKDNLLPEMEKGDKVKSIDIEPKQHFT
QPPARFSESTLIRVLEDNGVGRPSTYAPTLETIQRRYYVKLQNKRFEVTELGGIVNGLIN
EFFPQIVDVHFTADMEKNLDEVEEGNKEWEKVIDQFYQPFAVEVEKAEENMEKVQIKDEP
AGFDCELCGHPMVIKLGRYGKFYACSNFPDCRNTKPIVKEIGVACPVCGEGHVIERKSKK
NRIFYGCDRYPTCEFVSWDKPVGRSCPKCEHYLVEKKAKGSKQVICSNCDYKEEVQK
NT seq 1614 nt   +upstreamnt  +downstreamnt
gtggaaaaagttaaaaaaggtttaagtgcagggagagtacaatctgtagcgttaaagctg
atttgtgaacgagaagatgaaatcaatcgatttgaaccggaagagtattggtcaatcggt
gctaatttcaaaaaagataagaaaaaattcaaagctaatttttatggtttaaaaggaaaa
aaacaagccttgagcaatgctgaagatgtccaaaaaattattaaagaattggatggcgat
cagttcgaagtcatgtcagttacgaaaaaggaacggttaagaaatccggcgcttccgttt
aagacaagtagtttgcaacaagaagccgcaagaaaattaaattttagaacacgtaaaaca
atgatggttgctcaacaactttatgaaggaatttcgttaggccgtggtggggctgtcggt
ttgattacgtatatgcgtaccgattccaccagaatcgctctttcggctaaaaatgaagcc
gcggaatacattatcaaagaatttggaccagaatacgcagcatctaaacctcgaattgga
aaaaaagctgaaggcgaccaagatgctcatgaaggtattcgtccttccagcgtgttacgg
acaccaaaagaagttgaaaagtatctgacaaaagaccagtataaattgtataatctgatt
tggtcacgattggtagccagtcaaatgacacctgctgtatttgataccatgaaggtcgat
attgctcaaaaagatgtttactttagagcgaatgggtctaaagtgaaatttcctggttat
caaaaagtctatattgaaggcaatgatgaaggtaaagaagaaaaagataacttgctacca
gagatggaaaaaggcgataaagttaagtcgatcgatatcgagccaaaacaacatttcact
caaccacctgctcgcttctctgaatcgacattgattcgtgtgctggaagataacggtgta
ggtcgtccttctacgtatgctccaacattggaaaccattcaacgtaggtattatgttaaa
ctccaaaacaaacgttttgaagtaaccgaactgggggggattgtgaatgggcttattaat
gagttcttccctcagatcgtggatgttcactttactgcagatatggaaaaaaatctggat
gaagtcgaagaaggcaataaagaatgggaaaaagttattgatcaattctatcaaccattt
gctgtggaagtcgaaaaagcagaagagaatatggaaaaagttcagatcaaagatgagcca
gccggatttgactgtgagctttgcggacatccaatggtgattaagttgggtcgttatgga
aaattttatgcatgcagtaattttccggattgccgtaacactaaacccattgtgaaagaa
ataggtgtagcttgtccagtatgtggtgaagggcatgtaattgaacggaaatcaaagaaa
aatcgtattttttatggctgtgaccgttacccaacatgcgaatttgtatcatgggataaa
ccagttggacgcagctgtccgaaatgcgaacattatttagtagagaaaaaagcaaaaggc
agcaagcaagtcatctgcagcaattgtgattataaagaagaagtccaaaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (24)   

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