KEGG   Citrobacter rodentium: ROD_11461
Entry
ROD_11461         CDS       T01145                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cro  Citrobacter rodentium
Pathway
cro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ROD_11461 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cro03019]
    ROD_11461 (rne)
   03009 Ribosome biogenesis [BR:cro03009]
    ROD_11461 (rne)
Enzymes [BR:cro01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     ROD_11461 (rne)
Messenger RNA biogenesis [BR:cro03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ROD_11461 (rne)
Ribosome biogenesis [BR:cro03009]
 Prokaryotic type
  rRNA processing factors
   ROD_11461 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: CBG87913
UniProt: D2TTR9
Position
complement(1237054..1240284)
AA seq 1076 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PEPAEPVVKAAAPKAAAAPAAPAEPGLLSRLFGALKSLFSGGEEAKPAEQPAPKAAEKPE
RQQDRRKRQNNRRDRNDRNERSERRDSRDNRSERAESGESRDENRRNRRQAQQSADRDNR
QQTAEVAEKAKSGDEQQPQPRRERNRRRSEEKRQAQQEVKALSIDEQQTQDTEQEERVRP
AQPRRKQRQLAQKVRYTDNAADSEVVVAQVSEEKVATPVAEESAPVQSTELAKVPLPVVA
EAPQEQEESSEARDSAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLTVACASPE
MASGKVWIRYPVARPQDAEQREQEIEQVQAQPVAAEPQAVVAAVEVAETVVETVAQQAPV
QPEETIETTHPEVIAAPVDEQPQVIAEADVPVAEEVAAEAQPVVAAEESAPVAEETAEVV
TVEPEVAVEPVAVEPEVVAEPVKEQDVVEEVVAPAPVAAPVETVKVEKPVAVTPLAEHSH
ATAPMTRAPAPEYVPEAPRHSEWQRPAFVFEGKGAAGGHSATHHASAAPTRPQPVE
NT seq 3231 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgtgttgcccttgtagat
gggcagcgtctgtacgatctggatattgaaagtcctggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagtctggaagcggcttttgttgattac
ggcgccgaacgtcacggtttcctcccgctaaaagaaatcgcccgcgaatatttccccgct
agctacaacgcgcatggtcgacccaacatcaaagatgtgttgcgtgaaggtcaggaagtt
attgtccagatcgataaagaagaacgcggcaataaaggcgccgcgctgaccacctttatc
agcctggcgggcagctacctggtgctgatgcccaacaacccgcgcgcgggcggcatctcc
cgtcgtatcgaaggcgacgatcgcaccgaactgaaagaagcgctggccagtcttgagctg
cctgaaggcatggggcttatcgtgcgcaccgcgggcgtcggcaaatcggccgaagcgctg
cagtgggacttaagctttcgcctgaaacactgggaagcgattcagaaagcggcggaaagc
cgtcctgccccgttcctgatccatcaggagagcaacgtcatcgttcgcgccttccgcgac
tatctgcgtcaggatattggtgaaatcctcatcgataacccgaaagtcatggagatggcg
cgtcagcacatcgccgcgctgggtcgtccggatttcagcagcaaaattaaactgtatacc
ggtgaaattccgctgttcagccactatcagatcgagtcacagattgaatccgcgttccag
cgtgaagtgcgcctgccctccggcggctccattgttatcgacagcaccgaagcgttaacc
gccatcgacatcaactccgcacgcgctacccgcggcggcgatatcgaagaaaccgcgttt
aacaccaacctcgaagccgctgatgagatcgcccgccagctgcgtctgcgcgacctcggc
ggcctgatcgttatcgactttatcgacatgacgccggttcgtcaccagcgcgcggtggaa
aaccgtctgcgtgaggcggtgcgtcaggacagagcgcgcattcagatcagccacatttcc
cgcttcggcctgctggagatgtcccgccagcgcctgagcccgtcgcttggcgagtccagc
catcacgtctgcccgcgctgtagcggcaccggcaccgttcgtgacaacgaatcactgtcg
ctgtccattctgcgcctgatcgaagaagaagcgctgaaagagaacacccaggaggtccat
gcgatcgtgcctgtgccgattgcctcttacctgctgaacgaaaaacgcaccgccgtcaac
gccattgaaacccgccagaacggcgtgcgctgcgtcatcgtaccaaacgatcaaatggaa
acgccgcactactccgtgctgcgcgtccgcaaaggtgaagagacgccaaccctgagctac
atgctgccgaagctgcatgaagaagcaatggcgctgccttctgaagaagagtacgccgaa
cgcaaacgtcctgaacaaccggcgcttgccacctttgccatgccagacgttccgccagcg
ccagagcctgccgaaccggtggtgaaagcggccgcgccgaaagccgccgccgcgccagcc
gcccctgctgagccgggcctgttaagccgtctctttggcgcgctgaaatcgctgttcagc
ggtggcgaagaggccaaacctgccgagcagcctgcgccgaaagcggcggaaaaaccggaa
cgccagcaggatcgccgtaagcgtcagaacaaccgccgcgatcgcaatgaccgtaacgag
cgcagcgagcgtcgtgacagccgcgataaccgtagcgaacgtgctgaaagcggtgaaagc
cgtgatgaaaatcgccgtaaccgccgacaggcgcagcagagcgccgatcgcgacaaccgc
cagcagactgctgaggtagcagagaaagcgaagtccggcgacgagcagcagccacagccg
cgtcgcgagcgcaatcgtcgccgtagcgaagaaaaacgtcaggcgcagcaggaagtaaaa
gcgctgagtattgacgagcagcagacgcaggacaccgagcaggaagagcgcgtacgtccg
gctcagccgcgccgtaaacagcgtcagctggcgcagaaagtgcgttacaccgataatgcg
gctgacagcgaagtcgtggttgcgcaagtgagcgaagaaaaagtggcgacgccggttgcc
gaagagtccgcacctgtgcagagcaccgagctggcgaaagttccgctgccggttgtcgct
gaagcgcctcaggagcaggaagagagcagcgaagcgcgtgacagcgccggtatgccgcgt
cgttcccgtcgttcaccgcgccatctgcgggtcagcggccagcgccgtcgtcgttatcgt
gacgagcgttacccgctccagtcgccgatgccgctgacggttgcctgcgcatcgccggaa
atggcctccggtaaagtgtggatccgttatccggtcgcacgtccgcaggatgcggagcag
cgtgagcaggagatcgaacaggtacaggcgcagccggttgcggcagagccgcaggccgtt
gtcgccgccgttgaagtggcggagacggtggttgaaaccgttgcgcagcaagcgccggtt
cagccggaagaaaccatcgaaacaacccatccggaagtgattgccgcgccggttgatgaa
cagccacaggtgattgctgaagcggatgtaccggtagctgaagaggtcgccgccgaagcg
cagccggtcgtcgccgccgaggaatccgctccggtggccgaagaaacggcggaagtggtg
acggttgagcctgaagtggctgtcgaaccggtagctgtcgaacctgaggtggttgccgaa
ccggtgaaagagcaggacgttgtggaagaggttgtggctcctgcgcctgttgccgccccg
gttgaaaccgttaaggtggaaaaaccggtcgccgtcacgccgctggccgaacacagccac
gctaccgcgccgatgacccgcgcgccagcgccggaatacgtgccggaagcgccgcgtcac
agcgagtggcagcgtcctgccttcgtctttgaaggtaaaggcgcggcaggcggacacagc
gccacgcaccacgcctctgccgctccgactcgcccgcagcctgtcgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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