KEGG   Cryobacterium sp. LW097: B7495_02530
Entry
B7495_02530       CDS       T04908                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
cry  Cryobacterium sp. LW097
Brite
KEGG Orthology (KO) [BR:cry00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cry03032]
    B7495_02530 (topA)
   03400 DNA repair and recombination proteins [BR:cry03400]
    B7495_02530 (topA)
Enzymes [BR:cry01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     B7495_02530 (topA)
DNA replication proteins [BR:cry03032]
 Prokaryotic type
  DNA Topoisomerases
   B7495_02530 (topA)
DNA repair and recombination proteins [BR:cry03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      B7495_02530 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 HC2 Toprim_2
Other DBs
NCBI-ProteinID: ASD21109
Position
545327..548365
AA seq 1012 aa
MPGTKKLVIVESPTKMKSIAAYLGDGYEVLSSVGHIRDLIEPKNLPPELKKGPLGKFSVD
VDNGFEPYYVVSDAKKKTVSDLKRALKNADELLLATDEDREGEAIAWHLLQVLQPKVPVK
RMVFHEITKDAIIAATQNTRDLDTALVDAQETRRILDRIYGYEISPVLWRKVGPGLSAGR
VQSAATRLVVDRERERLAFVSAGYWDLIAQLVPGASAENGFQAKLVRLGGERIATGSDFD
DTGKLKPKVVAATLDEASALALADALKVPGVPIAVTKVASKPYRRSPAAPFTTSTLQQEA
ARKLRFTARQTMSVAQSLYENGYITYMRTDSPSLSQQAITAARKQAASLYGAETVPANPR
LYKGKSKNAQEAHEAIRPSGDTFRTPSSLSSSLRGNDFKLYDLIWKRTVASQMADATGST
ASVTIAAGPTGQAAHPAASEALAEFAASGTVITFRGFMLAYEESRDEERNASTDPTESKL
PPLEEGQTLTLVEVEAKGHETTPAARYTEASLVKKLEELGIGRPSTYASIISTITDRGYV
TPRGQALIPNWIAFSVVRLLEEFFTDLVEYDFTAEMEDDLDRIAGGTADRVDWLTSFYFG
SEKHRGLRQVVDNLGEIDARSINSIHIVDDITLRIGKYGPYLEVADPTADPDATPRRVNI
PPDLAPDELTPAKARELVDAPVVTDRVIGANPDNGKEIVAKDGRFGPYVTELEPPADTDG
PGESIDPLTGEVTSLADAGAPAAAPAAAAKPKRKTPAKKAAAAVKPRTASLFKSMDLATV
DLDTALALLNLPRVVGLDPETQTEILAQNGKFGPYLKKGVDTRSLTSEDQIFEIDLAGAI
ELYAQPKYGARRASSALKDFEEPDPESGKAIKIKDGRFGAYVTDGITNATIPKAESVDEV
DYERAVQLLADKRAKGPAVKKSPAKKAPAKKPAAKKPAAKKAPAKKAGAVKAGAVTKTAA
KRAPVKKTGTSAATPGVRAERTPEQKAATAAKAAATRAANAAAKAAQAAAQS
NT seq 3039 nt   +upstreamnt  +downstreamnt
gtgccaggcactaagaagctggtcattgtcgagtcgccgaccaagatgaagtcgatcgcc
gcctatctgggcgacggatacgaggttttgtcgtcggtcgggcacatccgagacctgatc
gagcccaagaatctgccgccggaactcaagaagggcccgctcggcaagttctccgtcgac
gtcgacaacggcttcgaaccgtattacgtggtctccgacgcgaagaagaaaaccgtcagt
gacctcaagcgggcgctgaagaacgccgacgaactcctcctcgcaactgatgaggaccgc
gaaggcgaggccatcgcgtggcacctcctgcaggtcttgcagcctaaggttccggtcaag
cggatggtgttccacgagatcaccaaggacgccatcatcgcggccacccagaacacccgc
gacctcgacaccgccctcgtcgacgcgcaggagacccggcgcatcctggaccgcatctac
ggctacgagatctcgcccgtgctctggcgcaaggtgggccccggcctgtccgccggccgc
gtgcagtccgccgccacccgcctcgtcgtcgaccgcgaacgtgaacgcctcgcgttcgtg
tccgccggctactgggacctcatcgcccagctcgttcccggcgcctccgccgagaacggc
ttccaggccaagctcgtgcgcctcggcggcgaacgcatcgccaccggcagcgacttcgac
gacaccggcaagctcaagcccaaggtcgtcgcggccaccctcgacgaggcatccgccctc
gccctggccgacgccctcaaggtgcccggcgtgccgatcgccgtcaccaaggtcgcctcc
aagccctaccgccgcagccccgccgcgccattcaccacctcgaccctgcagcaggaggcc
gcgcgcaagctgcgcttcaccgcccggcagaccatgagcgtggcccagtcgctgtacgaa
aacgggtacatcacctatatgcgtaccgactcgccttcgctgtcgcagcaggcgatcacc
gccgcccgcaagcaggccgcgtcgctgtacggcgccgagaccgtgcccgcgaacccgcgc
ctgtacaagggcaagagcaagaacgcgcaggaagcccacgaggccatccgcccgtccggc
gataccttccgcaccccgtcctcgctgtccagctcgctgcgcggcaacgacttcaagctc
tacgacctgatctggaagcgcaccgtcgccagccagatggcggatgcgaccggttcgacc
gcgtcggtgaccatcgccgcgggccccaccggccaggccgcgcaccccgccgcctccgag
gcgctcgccgaattcgccgccagcggcaccgtcatcaccttccgcggtttcatgctcgcg
tacgaggagtccagggacgaggagcggaacgcctccaccgaccccaccgagtcgaagctg
ccgccgctggaagagggccagacgctgaccctcgtcgaggtggaggccaagggccacgaa
accactccggccgcccggtacaccgaggccagcctggtgaagaagctcgaagagctcggc
atcggccgcccctccacgtacgcgtcgatcatctccaccatcaccgaccgtggttacgtc
accccgcgcgggcaggctctgatcccgaactggatcgccttctccgtggtgcggctgctc
gaggagttcttcaccgacctggtggaatacgacttcaccgccgaaatggaagacgacctc
gaccgcatcgccggcggcaccgccgaccgggtggactggctaaccagcttctacttcggt
tcggagaagcaccgcggcttgcgccaggtcgtcgacaacctcggcgagatcgacgcccgc
tcgatcaactcgatccacatcgtcgatgacatcaccctgcgcatcggcaagtacggcccc
tacctcgaagtcgccgaccccaccgccgacccggatgccaccccccgccgggtgaacatc
ccgccggacctggcacccgacgagctcacccctgccaaggcccgtgaactcgtggatgcc
ccggtcgtcaccgaccgcgtcatcggcgcgaacccggacaacggcaaggagatcgtcgcc
aaggacggccgcttcggcccgtacgtgaccgagctcgagccgccggcggacaccgacggt
cccggcgagtccatcgacccgcttaccggcgaggtcacctcgctggccgacgccggagcc
ccggccgccgcacccgctgccgccgccaagcccaagcgcaagaccccggccaagaaggcc
gccgccgcggtgaagccgcgcacggcgtcgctgttcaaatccatggacctggccaccgtc
gacctcgacaccgcgctggcgctgctgaacctgccgcgcgtggtgggcctggaccccgag
acgcagaccgagatcctcgcccagaacggcaagttcggtccgtacctcaagaagggcgtc
gacacccggtcgctcaccagcgaggaccagatcttcgagatcgacctggccggcgccatc
gagttgtacgcgcagcccaagtacggcgcccgccgtgcctccagcgcgctcaaggacttc
gaagagcccgacccggagagcggcaaggccatcaagatcaaggacggccggttcggcgcc
tacgtgacggatggcatcaccaacgccaccatccccaaggccgagagtgttgacgaggtc
gactacgagcgcgccgtgcagctgctcgccgacaagcgggccaagggcccggcggtgaag
aagtcgccggcgaagaaagctcccgccaagaagccggcggccaagaagcccgccgcgaag
aaggccccggccaaaaaagccggcgcagtgaaggccggtgcggtgaccaagaccgccgcc
aagcgggccccggtcaagaagaccggcacgtctgcggccacccccggcgtgcgcgccgag
cgcaccccggagcagaaggccgccaccgccgcgaaagccgcagccacccgggcggccaac
gcggccgcgaaggcagcacaggcggccgcgcagtcgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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