KEGG   Chromobacterium rhizoryzae: D1345_14845
Entry
D1345_14845       CDS       T05688                                 
Name
(GenBank) Rne/Rng family ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
crz  Chromobacterium rhizoryzae
Pathway
crz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:crz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D1345_14845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crz03019]
    D1345_14845
   03009 Ribosome biogenesis [BR:crz03009]
    D1345_14845
Enzymes [BR:crz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     D1345_14845
Messenger RNA biogenesis [BR:crz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     D1345_14845
Ribosome biogenesis [BR:crz03009]
 Prokaryotic type
  rRNA processing factors
   D1345_14845
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AXT47385
Position
complement(3280061..3283000)
AA seq 979 aa
MKRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDY
GTERHGFLPFKEVSRSYFQGYDGGRPRIQDVLREGMEVIVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKDLLSQLEVPHGMSLIARTAGIGRNLEELQW
DLGYLMQLWRAIEGAAGAQNAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTEEIYDQARQ
FMSHVMPNMLSRVKLYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSID
VNSARATKGADIEDTAVKTNLEAAEEIARQLRLRDLGGLVVIDFIDMESAKNQRDVENRL
RDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHETCPRCHGIGFIRGTESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRSEIHSIEERLDVDVVLIPNIHLETPHY
KIVRVRHDDLAEAGEAPSYKRVEVQEEDVITNFGHEKPKLERQEAAVKGITPQQPAPSVA
AKAAEPEPGLFGKLGAWVKSLFAEPEAVAQPAEKKKPAAQPHQRGNRQRNAERRPGGQAR
REHEQRRQGADEAKPRRPERAERGERQDGERQERPERKEQPQREERQERGEQPRNSRRRE
RENGREGRESREPRELKDAQRQQPAREEAPQERPEKLEKQERPQQEPRRRQAPQADEQAL
ELNKPAADEVRAEGDAEQQERNERRRRRSRRDRRRDDPSAAPQEEGAALPAAEAAPAAAV
AAVVVGAVAAEVAVDAVAETVPAAAPEAPVLEPVVEPVVVETAPPVREAFEAEAAAPVLE
SAAAAEPELPVVEAAAAAEAAPVVETAPVEVAVVVEAVEAFAAAEPALAPEPVALAAQSE
PEQAEPEVEAPVVIETRAVAASEPVSLGGLVMVSTKSVVEAPAVQEPVVPAGPRRRDVTR
QAQQEAAPAELVQVETRNP
NT seq 2940 nt   +upstreamnt  +downstreamnt
atgaaacgcatgttgttcaacgcaacgcaggctgaagagctgcgcgttgccattgtcgac
gggcagaagctcgtcgacctcgatatcgagactgtaggcaaagagcagcgcaaggggaat
atctataagggtgtgattacccgtatcgagccctcccttgaggcttgttttgtcgattac
ggcaccgaacgccacggcttcctgccgtttaaagaggtgtcccgttcctatttccagggc
tatgatggcggccgtccgcgcattcaggacgtgctgcgcgaaggcatggaagtcatcgtg
caggtggagaaggacgaacgcggcaacaagggtgcggcgctgaccacctatatcagcctg
gccggccgttacctggtgctgatgcccaacaacccgcgcggcggcggcgtatcgcgtcgc
attgagggcgaggagcgtcaagagctgaaggatctgctgtcgcagctggaagtgccgcac
ggcatgagcctgatcgcccgcaccgccggcattggccgcaatctggaagaactgcagtgg
gatctgggttacctgatgcagctgtggcgcgcgattgaaggcgcggccggcgctcagaac
gcgccgttcctgattttgcaggaaggcagcctggtgatccgcgcgatccgcgactatttc
catccggacatcggcgaagtgctgatcgacaccgaggaaatctacgatcaggcccgtcag
ttcatgagccatgtgatgcccaacatgctgtcgcgtgtgaagctgtacaaggatcatgtg
ccgctgttctcccgtttccagatcgagcaccagatcgaaaccgccttttcgcgcagcgtg
cagctgccgtctggcggcgccatcgtgatcgatcacaccgaagcgctggtgtccatcgac
gtcaactccgcgcgcgccaccaagggcgccgacatcgaagacaccgcggtcaagaccaac
ctggaagcggccgaggaaatcgcccgccaactgcgcttgcgcgacctgggtggcctggtg
gtgatcgacttcatcgatatggaaagcgccaagaaccagcgcgacgtggaaaaccgtttg
cgcgacgtgttgaagcacgaccgcgctcgcgtgcagatgggcaagctgtcccgttttggc
ctgctggagctctcgcgtcagcgcctgcagcccagcctgggcgagaccagccacgagacc
tgcccgcgctgtcacggcatcggcttcatccgcggcaccgagtcctccgctctgcacatc
ctgcgcatcatccaggaagaggcgatgaaggaaaacaccggcgcggttcacgcgcaggtg
ccggtggacgtggccaccttcctgctcaacgaaaagcgttccgaaatccattcgatcgaa
gagcgtctggacgtggacgtggtgctgatcccgaacattcatctggaaaccccgcattac
aagatcgtgcgcgtgcgccacgacgatctggccgaagccggcgaagcgccgagctacaag
cgggtggaagtgcaggaagaagacgtgatcaccaacttcggccatgaaaagccgaagctg
gagcgccaggaagccgcggtcaaaggcattaccccgcagcagccggcgccgtcggtggcg
gccaaggcggctgagccggagcctggcctgttcggcaagttgggcgcttgggtcaagagc
ctgttcgccgagccggaagcggtcgctcagccggccgagaagaaaaagccggcggcgcag
ccgcatcagcgcggcaaccgtcagcgtaacgccgagcgtcgcccgggtggccaggcgcgc
cgcgagcacgagcagcgccgtcagggcgccgacgaggccaagccgcgtcgtccggagcgc
gccgaacgcggcgagcgtcaggacggcgagcgtcaggagcgtccggaacgcaaggaacag
ccgcaacgcgaagagcggcaggagcgcggcgagcagccgcgcaacagtcgccgccgcgag
cgcgaaaacggccgcgaaggtcgtgaaagccgcgagccccgcgaactgaaggacgcgcag
cgtcagcagccggcgcgcgaagaagcgccgcaagagcgtccggagaagttggaaaagcag
gagcgtccgcagcaggagccgcgccgtcgtcaggcgccgcaggcggatgagcaggctttg
gagctgaacaagccggcggccgacgaggttcgcgccgagggcgacgccgagcagcaggag
cgcaatgagcgtcgtcgccgtcgcagccgtcgtgatcgtcgtcgcgacgatccgtccgct
gcgccgcaggaagagggcgctgctctgccggcggcggaagctgcgccggctgcggcagtg
gccgcagtcgttgtcggcgcggtagcggcggaagtcgccgtggacgcggtggcggaaacg
gttccggccgcggcgcctgaagcccctgtgcttgagccggtggttgagcccgttgttgtc
gaaacggcgccgccggtgcgggaagcgttcgaagcggaggctgcggcccccgtgcttgag
tccgctgcggcggctgaaccggaattgccggtagttgaagcggctgcggcggctgaggct
gctccggttgttgagacggctccggttgaagtggctgttgtggtggaggctgtcgaagcg
tttgccgcggcggagccggcgcttgcgccggaaccggttgccctggccgcgcaaagcgag
ccggagcaggctgagccggaagtcgaggcgccggtggtgattgaaacccgcgccgtggcc
gcgtctgaaccggtaagcctgggcggcttggtgatggtgtccaccaagtcggtggtcgag
gcgcccgctgtgcaagagccggtggtgccggctgggccgcgtcgtcgcgacgtgactcgc
caggctcagcaagaggccgctccggcggagctggtgcaggtggaaacccgcaatccttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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