KEGG   Chromohalobacter salexigens: Csal_0703
Entry
Csal_0703         CDS       T00347                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
csa  Chromohalobacter salexigens
Pathway
csa03030  DNA replication
csa03410  Base excision repair
csa03420  Nucleotide excision repair
csa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Csal_0703
   03410 Base excision repair
    Csal_0703
   03420 Nucleotide excision repair
    Csal_0703
   03430 Mismatch repair
    Csal_0703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csa03032]
    Csal_0703
   03400 DNA repair and recombination proteins [BR:csa03400]
    Csal_0703
Enzymes [BR:csa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Csal_0703
DNA replication proteins [BR:csa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Csal_0703
DNA repair and recombination proteins [BR:csa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Csal_0703
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Csal_0703
   MMR (mismatch excision repair)
    DNA ligase
     Csal_0703
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Csal_0703
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 DNA_ligase_ZBD BRCT HHH PTCB-BRCT zf-NADH-PPase RUBY_RBDX Big_3
Other DBs
NCBI-ProteinID: ABE58064
UniProt: Q1QZP4
Position
complement(789352..791427)
AA seq 691 aa
MSQIPQAVRERADTLHQQLDDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPELKTPD
SPTQRVGAAPAERFEEVTHAVPMLSLDNAFDDAELAAFVKRVADKLECDGDTLAFCCEPK
LDGLAVALVYENGRLVQGATRGDGRTGEDVTLNLRTIRSIPLKLRGDSIPPLIEVRGEVY
MRHSGFEALNDRARENGDKVFANPRNAAAGSLRQLDSSIAAARPLEFCAYQVARLEGEDD
AHSHSDYLKRLRTLGFRTSPLLDVVKGERGVIDFCHRLGEQRNGLDYDIDGAVIKVDSLR
DQRELGFVSRAPRWAIAYKYPAQEQTTTLNDVVFQVGRVGTLTPVAKLEPVQVAGVTVAN
ATLHNMDEIERLGVRIGDTVIVRRAGDVIPQIVGVVESQRPATTRAIEMPEHCPVCGSQT
ERLEGEVAARCSGGLFCPAQRKEALKHFASRRALDIDGLGEKLIDLLVEREWVKTPADLF
RLEAERLAELPRLAEKSANNLVNALEAAKRTTLARFIYAIGIREVGEATAASLARHFGSL
QALSEASLEALEAVEDVGPVVARHIHTFFRQPHNQETLEDLQGVGVTWEEVEIAGRPQPL
AGQTWVLTGTLESMTRDDGKARLQALGAKVSGSVSKKTAGVVAGEAAGSKLEKAQNLGVE
VIDEREFLQRLAHWESASSEDAQPTAPEDTP
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgagtcagattccccaagcggtccgcgagcgggccgacaccctgcaccagcagttggac
gacgccaactaccagtactacgtcgaggacgatccccgcatcaccgacgcggagtacgat
gccctgctgcgcgagctgcagtcactggaggccgagcaccccgagctgaagacgccggat
tcccccacgcagcgggtcggggcggcccccgccgagcgtttcgaggaagtgacccatgcc
gtgcccatgctgtcgctggacaacgccttcgacgacgcggagctggcggccttcgtcaag
cgcgtcgcggacaagctcgagtgcgacggcgacacgctcgcgttttgctgcgaacccaag
ctcgacggcctggcggtggcgctggtctacgagaacggacgactggtccagggcgccacg
cgcggcgacgggcgtaccggcgaggatgtcacgctcaatctgcgcaccatccgctcgatc
ccgctcaagctgcgcggcgactcgattccgccgctgatcgaggtacgcggcgaggtctac
atgcgccactcggggttcgaggcgctcaacgatcgcgcccgcgaaaacggcgacaaggtg
ttcgccaacccgcgcaacgccgccgccggtagcctgcgccagctggattcctcgatcgcc
gccgcgcggccgctggagttctgcgcctatcaggtcgcccggctcgaaggcgaggatgac
gcacactcgcattccgattatctcaagcgcctgcggacgctgggctttcgcaccagcccg
ctgctcgacgtggtcaagggcgagcgcggcgtgatcgacttctgccaccgcctgggcgaa
cagcgcaacggactcgattacgacatcgacggcgccgtgatcaaggtcgacagcctgcgc
gatcagcgcgaactgggcttcgtctcgcgggcgccgcgctgggccatcgcctacaagtac
cccgctcaggagcagaccaccacgctcaacgacgtggtcttccaggtgggccgtgtcggc
acgctgacgccggtggccaagctcgagccggtccaggtggccggtgtcaccgtcgccaac
gccaccttgcacaacatggacgagatcgaacgcctgggcgtgcgcatcggcgataccgtc
atcgtgcggcgcgccggcgacgtcatcccccagatcgtgggggtcgtcgagtcgcagcga
ccggccacgacacgcgccatcgagatgcccgagcactgcccggtgtgcggctcgcagacc
gagcgcctcgaaggcgaggtcgcggcgcgctgctccggcgggctgttctgcccggcccag
cgcaaggaggcgctgaagcacttcgccagccgccgcgcgctggatatcgacggcctgggc
gagaagttgatcgacctgctggtcgagcgcgaatgggtcaagacaccggcggacctgttc
cggctcgaggccgagcggcttgccgaactgccccgattggcggaaaagtccgccaacaac
ctggtcaacgcgctggaagccgccaagcgcaccaccctggcgcgcttcatctacgccatc
ggcatccgtgaagtgggcgaggccaccgccgcgagcctggcacgccacttcggctcgctg
caggccttgtcggaggcgtcgctggaggcgctggaagcggtcgaggacgtggggccagtg
gtcgcccggcatatccacaccttcttccgccagccccacaaccaggaaacgctcgaggac
ctgcagggggtcggcgtcacctgggaagaggtcgagatcgccggccgtccccagccgctc
gccggccagacctgggtgctgaccggtaccctggagagcatgacccgtgacgacggcaag
gcgcgcctgcaggcgctcggcgccaaggtctcgggcagcgtctccaagaagaccgccggc
gtggtcgccggagaggccgccggaagcaagctggagaaggcccagaacctgggcgtggag
gtcatcgacgagcgcgagttcctgcagcgcctggcgcactgggaaagcgcctcctcggaa
gacgcccagccaacagccccggaggacacaccatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (56)   

Download RDF
DBGET integrated database retrieval system