KEGG   Chromohalobacter salexigens: Csal_1518
Entry
Csal_1518         CDS       T00347                                 
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
csa  Chromohalobacter salexigens
Pathway
csa03030  DNA replication
csa03410  Base excision repair
csa03420  Nucleotide excision repair
csa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Csal_1518
   03410 Base excision repair
    Csal_1518
   03420 Nucleotide excision repair
    Csal_1518
   03430 Mismatch repair
    Csal_1518
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csa03032]
    Csal_1518
   03400 DNA repair and recombination proteins [BR:csa03400]
    Csal_1518
Enzymes [BR:csa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Csal_1518
DNA replication proteins [BR:csa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Csal_1518
DNA repair and recombination proteins [BR:csa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Csal_1518
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Csal_1518
   MMR (mismatch excision repair)
    DNA ligase
     Csal_1518
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Csal_1518
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 RNA_ligase HHH RecR_HhH SMN_YG-box
Other DBs
NCBI-ProteinID: ABE58871
UniProt: Q1QXD7
Position
complement(1727466..1729355)
AA seq 629 aa
MSRRPVWIDGSDMRPAPLRTAAWLRACLLVGLSTLAMPGWASAPPCPQMTPEAMQNDYQA
LDARIARWDRAYYRQGQRLVDDGTYDSAKRRLAHWAECFPLLAKPSVNTHEPTGAKHHPV
AQTGIAKLPDRDAVAGWVARQGDHPLWVQPKVDGVAVTLVYRHGRLAAAISRGDGVSGQD
WYTKALHIAAIPSHLPADAPPLVILQGELYARRTAHRQSRDGTDGARARIAGLMARDTLT
DREGSTIGLFVWAWPNGPDTMPERLETLAGWGFGDVAEMTHGVATAEDIAAWRQRWYRHA
LPFATDGVVVKRGDRPPGSDWQASPPDWAMAWKYPAREALARVDALEFSVGRTGRIAVVA
ELEPVLLGDKRVTRVSLGSLAHWRRTDVRPGDQVRLRLAGLTIPQLQEVVVRTRPRPQVD
APEADQYDRLSCLRFTPACRDQFLARLEWLGSDEGLDFPGIGPATWNQLVDAGLVKGLLD
WRTLDTAALEALPGVGKKTARAWQRHFALADTRSAVRWLRALGVPAVPRQALTDALERYG
MAGLGTLAPPDWRDYSGIGETRAMQLTRFFRDTDIRHWLASLESTRALQKQHGTNTRNEQ
KGDVRRVDVKQDNGTTWLPEQDSNLRPND
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgtcgcgacgacctgtgtggattgacggttcagacatgcgtcctgcgccactgcgaacc
gcagcctggctgagagcgtgcctgctggtcggcctgagcaccctcgccatgcccggctgg
gcgagcgcgccaccctgcccccagatgacgcccgaggccatgcagaacgactaccaggcc
ctcgacgctcggatcgcacgctgggatcgcgcctactaccgacagggacagcgcctggtc
gacgacggcacctacgacagcgccaaacgccggctcgcgcactgggcggagtgcttcccc
ttgctcgcgaagccatctgtcaacacgcacgaacccacgggggcgaagcatcatccggtc
gcacagaccggtatcgccaaactgcccgaccgcgacgccgttgccggctgggtcgcacgt
cagggcgatcacccgctgtgggtgcaacccaaggtcgacggcgtcgccgtgactctggtc
tatcggcatggccggcttgcagctgccatcagccgcggcgatggcgtctctggccaggat
tggtacaccaaggcgctgcatatcgcggcgattccctcgcacctgccggcagatgccccg
ccgctggtcatactgcaaggcgagctctacgccagacgcacggcacaccgacaatcgcgc
gacggcaccgacggtgcacgcgcgcgaatcgccggcctgatggcacgcgacaccttgacg
gatcgtgaaggcagcacgatcggcctgttcgtctgggcgtggcccaacggacccgacacc
atgcccgaacgcctggagacgctggctggctggggattcggcgacgtcgccgagatgacg
catggggtcgccacggcggaagatatcgccgcctggcgccaacgctggtaccgccatgcc
ctgcccttcgcgaccgatggcgtcgtcgtcaagcgcggagaccggccgccgggaagcgac
tggcaggcctcgccgccggactgggcaatggcttggaagtaccctgcgcgcgaggcgctc
gcgcgtgtcgatgcactcgaattctcggtcggtcgcaccgggcgcatcgcggtcgtcgcc
gagctggaaccggtccttctgggggacaagcgcgtgacccgcgtcagcctcgggtccctg
gcgcactggcgacgcacggacgtccgccccggcgatcaagtacgcttgcgcctggccggg
ctcaccatcccgcaactgcaggaggtcgtggtccgtactcggccgcgaccgcaggtcgac
gctcccgaggcagaccaatacgatcgcctttcctgcctgcggttcacgcccgcatgtcgc
gatcaattcctcgcgcgtctcgagtggctgggcagcgacgaggggctggactttcccggc
atcggtcccgcgacatggaatcagctggtggatgccggcctggtcaaggggcttctggac
tggcgaacgctcgataccgcagcccttgaagccttgcccggcgtaggcaagaagaccgcc
cgggcctggcagcggcatttcgccctcgccgacacgcgctctgcggtgcgctggttacgt
gccctgggcgttcccgccgtgcctcgacaggcactgaccgatgccctcgagcgatacggc
atggccggactcggcactctcgcgccaccggactggcgtgactactcagggatcggcgaa
acacgtgccatgcagctgacgcgtttttttcgagacacggacattcggcactggctggcg
tcactggaaagcacgagagcgcttcagaaacaacacgggacaaacacgaggaacgagcag
aaaggggacgtacggagggtcgatgtcaagcaggacaatggtaccacttggctccccgag
caggactcgaacctgcgacccaatgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (44)   

Download RDF
DBGET integrated database retrieval system